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methylationepic
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0
votes
3
replies
1.6k
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MINFI missing samples in qcreports and densityplots
minfi
illumina
methylationEPIC
densityplot
7.4 years ago
annabelle.congras
▴ 10
3
votes
6
replies
2.1k
views
could not find function "champ.load"
ChAMP
champ 2.9.10
methylationepic
6.2 years ago • updated 6.1 years ago
david.ch
• 0
0
votes
2
replies
1.9k
views
Illumina methylationEPIC demo data in IDAT format?
methylation
illumina
EPIC
methylationepic
idat
updated 7.0 years ago by
Guido Hooiveld
★ 4.0k • written 7.0 years ago by
Ellen O
• 0
3
votes
4
replies
3.0k
views
Error while using champ.svd() function in subset of data
ChAMP
methylationepic
epicarray
epigenomics
updated 6.6 years ago by
rcavalca
▴ 140 • written 6.6 years ago by
karthikrpad
▴ 10
0
votes
4
replies
1.7k
views
minfi "mapToGenome" dimension error
methylation
epic microarray
minfi
methylationepic
7.2 years ago
nhejazi
• 0
0
votes
1
reply
1.9k
views
ChAMP Methylation analysis error code "could not find function champ.load"
champ
methylationepic
updated 6.3 years ago by
Yuan Tian
▴ 290 • written 6.3 years ago by
csappleby-mallinder1
• 0
0
votes
0
replies
831
views
Best normalisation method
microarray
methylationEPIC
epigenetics
minfi
EPIC
5.2 years ago
rmf
▴ 20
0
votes
0
replies
1.0k
views
differential methylation analysis with RnBeads
rnbeads
methylation
methylationepic
dna methylation
6.2 years ago
gabrielrfries
• 0
0
votes
0
replies
1.0k
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
7.2 years ago
chelsey.ju
• 0
0
votes
0
replies
1.1k
views
Beta values and M values cluster differently
methylationEPIC
minfi
microarray
epigenetics
EPIC
5.2 years ago
rmf
▴ 20
0
votes
0
replies
903
views
Error when changing the database for minfi dropLociWithSnps
minfi
methylationepic
illuminahumanmethylationepicanno.ilmn10b.hg19
SNP
6.9 years ago
Ellen O
• 0
11 results • Page
1 of 1
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Marcel Ramos
690
`BiocManager` does not install local packages. It only installs Bioconductor, CRAN, and GitHub ones. You should install local packages w…
Comment: error running enricher from clusterprofiler
by
Yael
• 0
It worked!!! Thanks alot, i think something in the gene_list wasnt right... Thanks agian
Comment: Create protein sequences including variants from a VCF file
by
Yun
• 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization?
by
Daniel
• 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Votes
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
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