Bioconductor Ncbi

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892

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Rstudio cDNA ensembldb NCBI

17 months ago • updated 16 months ago R_Page • 0

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2.7k

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RStudio convert ensembldb NCBI

updated 6 months ago by MauriAndres • 0 • written 17 months ago by j_denton • 0

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863

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getGFF NCBI biomartr biomaRt

3.7 years ago Matan G. ▴ 60

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1.3k

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MakeOrgPackageFromNCBI NCBI SQL AnnotationForge

updated 4.9 years ago by James W. MacDonald 68k • written 4.9 years ago by chefer • 0

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1.8k

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ontology edger limma ncbi organism package

updated 5.1 years ago by Gordon Smyth 52k • written 5.1 years ago by babak.loghmani ▴ 20

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2.6k

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rsubread ncbi GRCh38 hg38

updated 8.5 years ago by Wei Shi ★ 3.6k • written 8.5 years ago by jan.soderman • 0

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1.7k

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ncbi sra search

9.2 years ago massacomgrao • 0

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4.2k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 9.3 years ago by Hervé Pagès 16k • written 9.3 years ago by gokcen.eraslan ▴ 10

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3.8k

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microarray normalization ncbi

updated 10.0 years ago by James W. MacDonald 68k • written 10.0 years ago by pankajnarula84 ▴ 20

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1.5k

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annotate ncbi url

10.3 years ago reuma • 0

10 results • Page 1 of 1

Recent ...

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Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0

That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…

Comment: RNA Seq using Lrt by Rob • 0

So if I have understood what you have said : If i want to see if Day (time) has an effect / is being tested - then the reduced model should…

Comment: How to convert transcript counts to gene counts in R? by ben • 0

Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/

Answer: EuroBioC2024 abstract submission is open! by Ali • 0

[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…

Answer: ROAST for small sets by Gordon Smyth 52k

The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…

Votes

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

Awards • All

Popular Question to sergisayolspuig ▴ 80

Popular Question to richardallenfriedmanbrooklyn ▴ 30

Scholar to Gordon Smyth 52k