Bioconductor Ncbi

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1.1k

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Rstudio cDNA ensembldb NCBI

23 months ago R_Page • 0

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3.4k

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RStudio convert ensembldb NCBI

updated 13 months ago by MauriAndres • 0 • written 24 months ago by j_denton • 0

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976

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getGFF NCBI biomartr biomaRt

4.2 years ago Matan G. ▴ 60

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1.5k

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MakeOrgPackageFromNCBI NCBI SQL AnnotationForge

updated 5.5 years ago by James W. MacDonald 68k • written 5.5 years ago by chefer • 0

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2.0k

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ontology edger limma ncbi organism package

updated 5.6 years ago by Gordon Smyth 53k • written 5.6 years ago by babak.loghmani ▴ 20

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2.8k

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rsubread ncbi GRCh38 hg38

updated 9.0 years ago by Wei Shi ★ 3.6k • written 9.0 years ago by jan.soderman • 0

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1.8k

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ncbi sra search

9.8 years ago massacomgrao • 0

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4.5k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 9.8 years ago by Hervé Pagès 16k • written 9.8 years ago by gokcen.eraslan ▴ 10

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4.0k

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microarray normalization ncbi

updated 10.5 years ago by James W. MacDonald 68k • written 10.5 years ago by pankajnarula84 ▴ 20

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1.6k

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annotate ncbi url

10.8 years ago reuma • 0

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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