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ncbi
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2
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3
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815
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NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio
cDNA
ensembldb
NCBI
14 months ago
R_Page
• 0
4
votes
6
replies
2.1k
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio
convert
ensembldb
NCBI
updated 4 months ago by
MauriAndres
• 0 • written 15 months ago by
j_denton
• 0
0
votes
0
replies
842
views
getGFFSet function CRASHES R session
getGFF
NCBI
biomartr
biomaRt
3.5 years ago
Matan G.
▴ 60
2
votes
4
replies
1.3k
views
MakeOrgPackageFromNCBI SQL error
MakeOrgPackageFromNCBI
NCBI
SQL
AnnotationForge
updated 4.8 years ago by
James W. MacDonald
68k • written 4.8 years ago by
chefer
• 0
1
vote
5
replies
1.7k
views
Gene Ontology analysis
ontology
edger
limma
ncbi
organism package
updated 4.9 years ago by
Gordon Smyth
52k • written 4.9 years ago by
babak.loghmani
▴ 20
0
votes
4
replies
2.5k
views
Rsubread function buildindex cannot handle the GRCh38.p7 reference from NCBI
rsubread
ncbi
GRCh38
hg38
updated 8.3 years ago by
Wei Shi
★ 3.6k • written 8.3 years ago by
jan.soderman
• 0
0
votes
0
replies
1.6k
views
Search SRA based on BioSample Attributes
ncbi
sra
search
9.1 years ago
massacomgrao
• 0
8
votes
7
replies
4.1k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi
refseq
maketxdbfromgff
fetchExtendedChromInfoFromUCSC
genomeinfodb
updated 9.1 years ago by
Hervé Pagès
16k • written 9.1 years ago by
gokcen.eraslan
▴ 10
2
votes
2
replies
3.7k
views
How to Normalize the Microarray Data Obtained from ncbi?
microarray
normalization
ncbi
updated 9.8 years ago by
James W. MacDonald
68k • written 9.8 years ago by
pankajnarula84
▴ 20
0
votes
1
reply
1.4k
views
.getNcbiURL returns old NCBI url ?
annotate
ncbi
url
10.1 years ago
reuma
• 0
10 results • Page
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Comment: Overcoming confounding in batch effect correction
by
ATpoint
★ 4.6k
Hi, this is not related to Bioconductor directly. And no, you cannot correct anything because in your own batch you only have a single samp…
Comment: MEDIPS - error using MEDIPS.CpGenrich
by
sg
• 0
I have the same error when I use 22 chrs with the paramenters chr.select: Error in h(simpleError(msg, call)) : error in evaluating the …
Comment: Overcoming confounding in batch effect correction
by
mimi
• 0
https://www.bioconductor.org/packages/release/BiocViews.html#___BiologicalQuestion
Comment: GSVA on RNAseq data
by
Robert Castelo
★ 3.4k
Hi Bob, I have not investigated whether a particular unit of expression works better than others, but using logTPM or logCPM units of expr…
Answer: Store Matrix in DataFrame Cell
by
James W. MacDonald
68k
Put it in a list and put the list in a column.
Votes
Overcoming confounding in batch effect correction
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
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