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ncbi
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reset
2
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3
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1.1k
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NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio
cDNA
ensembldb
NCBI
23 months ago • updated 22 months ago
R_Page
• 0
4
votes
6
replies
3.3k
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio
convert
ensembldb
NCBI
updated 12 months ago by
MauriAndres
• 0 • written 23 months ago by
j_denton
• 0
0
votes
0
replies
950
views
getGFFSet function CRASHES R session
getGFF
NCBI
biomartr
biomaRt
4.2 years ago
Matan G.
▴ 60
2
votes
4
replies
1.5k
views
MakeOrgPackageFromNCBI SQL error
MakeOrgPackageFromNCBI
NCBI
SQL
AnnotationForge
updated 5.4 years ago by
James W. MacDonald
68k • written 5.4 years ago by
chefer
• 0
1
vote
5
replies
2.0k
views
Gene Ontology analysis
ontology
edger
limma
ncbi
organism package
updated 5.6 years ago by
Gordon Smyth
53k • written 5.6 years ago by
babak.loghmani
▴ 20
0
votes
4
replies
2.8k
views
Rsubread function buildindex cannot handle the GRCh38.p7 reference from NCBI
rsubread
ncbi
GRCh38
hg38
updated 9.0 years ago by
Wei Shi
★ 3.6k • written 9.0 years ago by
jan.soderman
• 0
0
votes
0
replies
1.8k
views
Search SRA based on BioSample Attributes
ncbi
sra
search
9.7 years ago
massacomgrao
• 0
8
votes
7
replies
4.5k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi
refseq
maketxdbfromgff
fetchExtendedChromInfoFromUCSC
genomeinfodb
updated 9.8 years ago by
Hervé Pagès
16k • written 9.8 years ago by
gokcen.eraslan
▴ 10
2
votes
2
replies
3.9k
views
How to Normalize the Microarray Data Obtained from ncbi?
microarray
normalization
ncbi
updated 10.5 years ago by
James W. MacDonald
68k • written 10.5 years ago by
pankajnarula84
▴ 20
0
votes
1
reply
1.6k
views
.getNcbiURL returns old NCBI url ?
annotate
ncbi
url
10.8 years ago
reuma
• 0
10 results • Page
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
by
teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
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Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
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