Bioconductor Ncbi

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850

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Rstudio cDNA ensembldb NCBI

15 months ago R_Page • 0

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2.4k

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RStudio convert ensembldb NCBI

updated 5 months ago by MauriAndres • 0 • written 16 months ago by j_denton • 0

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855

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getGFF NCBI biomartr biomaRt

3.6 years ago Matan G. ▴ 60

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1.3k

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MakeOrgPackageFromNCBI NCBI SQL AnnotationForge

updated 4.8 years ago by James W. MacDonald 68k • written 4.8 years ago by chefer • 0

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1.7k

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ontology edger limma ncbi organism package

updated 5.0 years ago by Gordon Smyth 52k • written 5.0 years ago by babak.loghmani ▴ 20

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2.6k

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rsubread ncbi GRCh38 hg38

updated 8.4 years ago by Wei Shi ★ 3.6k • written 8.4 years ago by jan.soderman • 0

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1.6k

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ncbi sra search

9.1 years ago massacomgrao • 0

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4.1k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 9.2 years ago by Hervé Pagès 16k • written 9.2 years ago by gokcen.eraslan ▴ 10

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3.7k

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microarray normalization ncbi

updated 9.9 years ago by James W. MacDonald 68k • written 9.9 years ago by pankajnarula84 ▴ 20

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1.5k

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annotate ncbi url

10.2 years ago reuma • 0

10 results • Page 1 of 1

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Answer: affy::rma results doesn't match with ncbi website by ATpoint ★ 4.7k

Exact OMCIS reproduction down to the values without code and software version is borderline impossible. Either use the values as provided o…

Answer: Use of org.Rn.eg.db with GRCr8 reference genome by James W. MacDonald 68k

You've got it backwards. It should be ``` adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…

Comment: DESeq2 swap ensembl gene id rownames with gene symbol column by Erika • 0

Alternatively, you could have added a column with the common gene names. Assuming your dataframe `df` was created using `DESeq()`, somethin…

Answer: Clarification on GOALL / GO2ALLORFs mapping by James W. MacDonald 68k

It appears that 'negative regulation of glycogen biosynthesis' has an 'is a' relationship with 'glycogen biosynthetic process' https://www.…

Comment: Can't post a question? by DavideSant • 0

Thank you, this was super useful!

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Comment: Can't post a question?

Answer: Limma - Complex 2-way multi-level contrast with paired samples

Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks

Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression

Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf

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