Showing : ncbi • reset
2
votes
3
replies
770
views
NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio cDNA ensembldb NCBI
12 months ago R_Page • 0
4
votes
6
replies
1.8k
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
updated 11 weeks ago by • 0 • written 13 months ago by • 0
0
votes
0
replies
806
views
getGFFSet function CRASHES R session
getGFF NCBI biomartr biomaRt
3.4 years ago Matan G. ▴ 60
2
votes
4
replies
1.2k
views
MakeOrgPackageFromNCBI SQL error
MakeOrgPackageFromNCBI NCBI SQL AnnotationForge
updated 4.6 years ago by 67k • written 4.6 years ago by • 0
1
vote
5
replies
1.6k
views
Gene Ontology analysis
ontology edger limma ncbi organism package
updated 4.8 years ago by 52k • written 4.8 years ago by ▴ 20
0
votes
4
replies
2.5k
views
Rsubread function buildindex cannot handle the GRCh38.p7 reference from NCBI
rsubread ncbi GRCh38 hg38
updated 8.1 years ago by ★ 3.6k • written 8.2 years ago by • 0
0
votes
0
replies
1.6k
views
Search SRA based on BioSample Attributes
ncbi sra search
8.9 years ago massacomgrao • 0
8
votes
7
replies
3.9k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb
updated 8.9 years ago by 16k • written 8.9 years ago by ▴ 10
2
votes
2
replies
3.6k
views
How to Normalize the Microarray Data Obtained from ncbi?
microarray normalization ncbi
updated 9.6 years ago by 67k • written 9.6 years ago by ▴ 20
0
votes
1
reply
1.4k
views
.getNcbiURL returns old NCBI url ?
annotate ncbi url
10.0 years ago reuma • 0
10 results • Page 1 of 1
Recent ...
Replies
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
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Scholar to James W. MacDonald 67k
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