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noiseq
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1.2k
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Inquiring about Comparative Analysis without Replicates in NOIseq R Package
NOISeq
withoutreplicate
Noiseq
updated 2.3 years ago by
ATpoint
★ 5.0k • written 2.3 years ago by
Rutuja
• 0
1
vote
1
reply
1.2k
views
NOIseq Probability column
RNAseq
RNASeqData
NOISeq
3.5 years ago
Pratibha
▴ 10
0
votes
2
replies
1.3k
views
Differential expression on RNAseq without replicates
DESeq2
NOISeq
edgeR
updated 5.0 years ago by
ATpoint
★ 5.0k • written 5.0 years ago by
Themis
• 0
3
votes
6
replies
2.7k
views
deseq2 + filtering low counts with noiseq function
deseq2
noiseq
lowcounts
rnaseq
updated 3.9 years ago by
Michael Love
43k • written 5.2 years ago by
andreia
▴ 10
0
votes
1
reply
1.3k
views
How to arrange multiple plots into one page in NOISeq?
noiseq
RNA-seq
quality control
updated 18 months ago by
baptiste.bidon
• 0 • written 6.3 years ago by
Arindam
▴ 80
0
votes
0
replies
981
views
NOISeq 'readData' not writing correctly
software error
NOISeq
6.4 years ago
jledmondson
• 0
0
votes
1
reply
1.3k
views
Is possible to use NOISeq with counts from RSubread?
noiseq
rsubread
tophat
bowtie
bowtie2
6.5 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
1.4k
views
Noiseqbio function (NOISEQ package)
noiseq
logfoldchange
7.6 years ago
Aurora
▴ 20
0
votes
0
replies
1.3k
views
NOISeq: Need help with my data frame
R
noiseq
data.frame
7.9 years ago
aokoro
• 0
0
votes
0
replies
2.2k
views
Problem with heatmap by ComplexHeatmap
complexheatmap
Rstudio
NOISeq
8.2 years ago
Luiz
• 0
0
votes
3
replies
2.0k
views
Is the CPM filtering method from NOISeq unsupervised?
rnaseq
de analysis
gene filtering
noiseq
updated 8.3 years ago by
James W. MacDonald
68k • written 8.3 years ago by
Mau
▴ 50
0
votes
5
replies
4.8k
views
GC content and length bias correction with DESeq2 using cqn normalization factor matrix
deseq2
cqn
noiseq
updated 8.6 years ago by
Michael Love
43k • written 8.6 years ago by
glmazzo
▴ 10
0
votes
0
replies
1.6k
views
NOISeq error message while using ARSyNseq batch correction function
noiseq
batch effect
ARSyNseq
10.1 years ago
lina.faller
▴ 10
0
votes
0
replies
1.3k
views
Question: type of NOISeq package input file
RNASeq
NOISeq
RNASeq
NOISeq
12.8 years ago
Guest User
★ 13k
0
votes
2
replies
3.2k
views
NOISeq initialization problem
NOISeq
NOISeq
updated 13.2 years ago by
Dan Tenenbaum
★ 8.2k • written 13.2 years ago by
Guest User
★ 13k
0
votes
4
replies
2.5k
views
NOISeq installation error
NOISeq
NOISeq
updated 13.2 years ago by
Sean Davis
21k • written 13.2 years ago by
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
1.4k
views
NOISeq-real input parameters
NOISeq
NOISeq
13.7 years ago
Guest User
★ 13k
17 results • Page
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Recent ...
Replies
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA
by
Gordon Smyth
53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR
by
James W. MacDonald
68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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