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noiseq
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Inquiring about Comparative Analysis without Replicates in NOIseq R Package
NOISeq
withoutreplicate
Noiseq
updated 15 months ago by
ATpoint
★ 4.5k • written 15 months ago by
Rutuja
• 0
1
vote
1
reply
917
views
NOIseq Probability column
RNAseq
RNASeqData
NOISeq
2.5 years ago • updated 2.4 years ago
Pratibha
▴ 10
0
votes
2
replies
1.1k
views
Differential expression on RNAseq without replicates
DESeq2
NOISeq
edgeR
updated 3.9 years ago by
ATpoint
★ 4.5k • written 3.9 years ago by
Themis
• 0
3
votes
6
replies
2.0k
views
deseq2 + filtering low counts with noiseq function
deseq2
noiseq
lowcounts
rnaseq
updated 2.8 years ago by
Michael Love
42k • written 4.2 years ago by
andreia
▴ 10
0
votes
1
reply
921
views
How to arrange multiple plots into one page in NOISeq?
noiseq
RNA-seq
quality control
updated 6 months ago by
baptiste.bidon
• 0 • written 5.2 years ago by
Arindam
▴ 80
0
votes
0
replies
794
views
NOISeq 'readData' not writing correctly
software error
NOISeq
5.4 years ago
jledmondson
• 0
0
votes
1
reply
1.0k
views
Is possible to use NOISeq with counts from RSubread?
noiseq
rsubread
tophat
bowtie
bowtie2
5.5 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
1.1k
views
Noiseqbio function (NOISEQ package)
noiseq
logfoldchange
6.6 years ago
Aurora
▴ 20
0
votes
0
replies
1.1k
views
NOISeq: Need help with my data frame
R
noiseq
data.frame
6.8 years ago
aokoro
• 0
0
votes
0
replies
1.8k
views
Problem with heatmap by ComplexHeatmap
complexheatmap
Rstudio
NOISeq
7.2 years ago
Luiz
• 0
0
votes
3
replies
1.7k
views
Is the CPM filtering method from NOISeq unsupervised?
rnaseq
de analysis
gene filtering
noiseq
updated 7.3 years ago by
James W. MacDonald
67k • written 7.3 years ago by
Mau
▴ 50
0
votes
5
replies
4.1k
views
GC content and length bias correction with DESeq2 using cqn normalization factor matrix
deseq2
cqn
noiseq
updated 7.5 years ago by
Michael Love
42k • written 7.6 years ago by
glmazzo
▴ 10
0
votes
0
replies
1.4k
views
NOISeq error message while using ARSyNseq batch correction function
noiseq
batch effect
ARSyNseq
9.1 years ago
lina.faller
▴ 10
0
votes
0
replies
1.1k
views
Question: type of NOISeq package input file
RNASeq
NOISeq
RNASeq
NOISeq
11.7 years ago
Guest User
★ 13k
0
votes
2
replies
2.9k
views
NOISeq initialization problem
NOISeq
NOISeq
updated 12.1 years ago by
Dan Tenenbaum
★ 8.2k • written 12.1 years ago by
Guest User
★ 13k
0
votes
4
replies
2.2k
views
NOISeq installation error
NOISeq
NOISeq
updated 12.1 years ago by
Sean Davis
21k • written 12.1 years ago by
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
1.2k
views
NOISeq-real input parameters
NOISeq
NOISeq
12.7 years ago
Guest User
★ 13k
17 results • Page
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Replies
Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data
by
Gordon Smyth
51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?
Votes
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
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