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noiseq
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1.3k
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Inquiring about Comparative Analysis without Replicates in NOIseq R Package
NOISeq
withoutreplicate
Noiseq
updated 2.4 years ago by
ATpoint
★ 5.0k • written 2.4 years ago by
Rutuja
• 0
1
vote
1
reply
1.2k
views
NOIseq Probability column
RNAseq
RNASeqData
NOISeq
3.6 years ago • updated 3.5 years ago
Pratibha
▴ 10
0
votes
2
replies
1.3k
views
Differential expression on RNAseq without replicates
DESeq2
NOISeq
edgeR
updated 5.0 years ago by
ATpoint
★ 5.0k • written 5.0 years ago by
Themis
• 0
3
votes
6
replies
2.8k
views
deseq2 + filtering low counts with noiseq function
deseq2
noiseq
lowcounts
rnaseq
updated 3.9 years ago by
Michael Love
43k • written 5.3 years ago by
andreia
▴ 10
0
votes
1
reply
1.3k
views
How to arrange multiple plots into one page in NOISeq?
noiseq
RNA-seq
quality control
updated 19 months ago by
baptiste.bidon
• 0 • written 6.3 years ago by
Arindam
▴ 80
0
votes
0
replies
989
views
NOISeq 'readData' not writing correctly
software error
NOISeq
6.5 years ago
jledmondson
• 0
0
votes
1
reply
1.3k
views
Is possible to use NOISeq with counts from RSubread?
noiseq
rsubread
tophat
bowtie
bowtie2
6.5 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
1.4k
views
Noiseqbio function (NOISEQ package)
noiseq
logfoldchange
7.7 years ago
Aurora
▴ 20
0
votes
0
replies
1.4k
views
NOISeq: Need help with my data frame
R
noiseq
data.frame
7.9 years ago
aokoro
• 0
0
votes
0
replies
2.2k
views
Problem with heatmap by ComplexHeatmap
complexheatmap
Rstudio
NOISeq
8.3 years ago
Luiz
• 0
0
votes
3
replies
2.0k
views
Is the CPM filtering method from NOISeq unsupervised?
rnaseq
de analysis
gene filtering
noiseq
updated 8.4 years ago by
James W. MacDonald
68k • written 8.4 years ago by
Mau
▴ 50
0
votes
5
replies
4.8k
views
GC content and length bias correction with DESeq2 using cqn normalization factor matrix
deseq2
cqn
noiseq
updated 8.6 years ago by
Michael Love
43k • written 8.6 years ago by
glmazzo
▴ 10
0
votes
0
replies
1.6k
views
NOISeq error message while using ARSyNseq batch correction function
noiseq
batch effect
ARSyNseq
10.2 years ago
lina.faller
▴ 10
0
votes
0
replies
1.3k
views
Question: type of NOISeq package input file
RNASeq
NOISeq
RNASeq
NOISeq
12.8 years ago
Guest User
★ 13k
0
votes
2
replies
3.2k
views
NOISeq initialization problem
NOISeq
NOISeq
updated 13.2 years ago by
Dan Tenenbaum
★ 8.2k • written 13.2 years ago by
Guest User
★ 13k
0
votes
4
replies
2.5k
views
NOISeq installation error
NOISeq
NOISeq
updated 13.2 years ago by
Sean Davis
21k • written 13.2 years ago by
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
1.4k
views
NOISeq-real input parameters
NOISeq
NOISeq
13.8 years ago
Guest User
★ 13k
17 results • Page
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Replies
Comment: segfault in edgeR glmQLFit
by
Gordon Smyth
53k
We have committed a bug fix now to edgeR on both the release and developmental Bioconductor repositories.
Answer: Ensembl site unresponsive via biomaRt
by
horaortiz8
• 0
I appreciate the link. I'll get in touch with them directly; I wish they had a status page of some kind. https://www.ensembl.org/Help/Cont…
Comment: segfault in edgeR glmQLFit
by
Mark
• 0
Thanks! We had been considering some of these adjustments as well, given the small number of features and total reads. Your advice is well-…
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
ATpoint
★ 5.0k
> and I first used the normalized counts You would not use these normalized counts for PCA as they're not on log2 scale. As such, the feat…
Comment: EuroBioC2026 abstract submission is open!
by
TikTsokaasocissalpc
• 0
Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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