Bioconductor Noiseq

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954

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NOISeq withoutreplicate Noiseq

updated 19 months ago by ATpoint ★ 4.8k • written 19 months ago by Rutuja • 0

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1.0k

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RNAseq RNASeqData NOISeq

2.8 years ago Pratibha ▴ 10

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1.1k

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DESeq2 NOISeq edgeR

updated 4.3 years ago by ATpoint ★ 4.8k • written 4.3 years ago by Themis • 0

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2.3k

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deseq2 noiseq lowcounts rnaseq

updated 3.2 years ago by Michael Love 43k • written 4.5 years ago by andreia ▴ 10

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1.0k

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noiseq RNA-seq quality control

updated 10 months ago by baptiste.bidon • 0 • written 5.6 years ago by Arindam ▴ 80

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855

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software error NOISeq

5.7 years ago jledmondson • 0

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1.1k

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noiseq rsubread tophat bowtie bowtie2

5.8 years ago Marcelo Laia ▴ 450

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1.2k

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noiseq logfoldchange

6.9 years ago Aurora ▴ 20

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1.2k

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R noiseq data.frame

7.2 years ago aokoro • 0

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1.9k

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complexheatmap Rstudio NOISeq

7.5 years ago Luiz • 0

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1.7k

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rnaseq de analysis gene filtering noiseq

updated 7.6 years ago by James W. MacDonald 68k • written 7.6 years ago by Mau ▴ 50

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deseq2 cqn noiseq

updated 7.9 years ago by Michael Love 43k • written 7.9 years ago by glmazzo ▴ 10

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1.4k

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noiseq batch effect ARSyNseq

9.4 years ago lina.faller ▴ 10

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1.2k

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RNASeq NOISeq RNASeq NOISeq

12.1 years ago Guest User ★ 13k

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3.0k

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NOISeq NOISeq

updated 12.5 years ago by Dan Tenenbaum ★ 8.2k • written 12.5 years ago by Guest User ★ 13k

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NOISeq NOISeq

updated 12.5 years ago by Sean Davis 21k • written 12.5 years ago by Fatemehsadat Seyednasrollah ▴ 260

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1.3k

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NOISeq NOISeq

13.0 years ago Guest User ★ 13k

17 results • Page 1 of 1

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Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Benjamin ▴ 20

I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…

Votes

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

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