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noiseq
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0
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1.2k
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Inquiring about Comparative Analysis without Replicates in NOIseq R Package
NOISeq
withoutreplicate
Noiseq
updated 2.2 years ago by
ATpoint
★ 5.0k • written 2.2 years ago by
Rutuja
• 0
1
vote
1
reply
1.2k
views
NOIseq Probability column
RNAseq
RNASeqData
NOISeq
3.4 years ago
Pratibha
▴ 10
0
votes
2
replies
1.3k
views
Differential expression on RNAseq without replicates
DESeq2
NOISeq
edgeR
updated 4.9 years ago by
ATpoint
★ 5.0k • written 4.9 years ago by
Themis
• 0
3
votes
6
replies
2.6k
views
deseq2 + filtering low counts with noiseq function
deseq2
noiseq
lowcounts
rnaseq
updated 3.8 years ago by
Michael Love
43k • written 5.1 years ago by
andreia
▴ 10
0
votes
1
reply
1.2k
views
How to arrange multiple plots into one page in NOISeq?
noiseq
RNA-seq
quality control
updated 17 months ago by
baptiste.bidon
• 0 • written 6.2 years ago by
Arindam
▴ 80
0
votes
0
replies
953
views
NOISeq 'readData' not writing correctly
software error
NOISeq
6.3 years ago
jledmondson
• 0
0
votes
1
reply
1.3k
views
Is possible to use NOISeq with counts from RSubread?
noiseq
rsubread
tophat
bowtie
bowtie2
6.4 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
1.4k
views
Noiseqbio function (NOISEQ package)
noiseq
logfoldchange
7.5 years ago
Aurora
▴ 20
0
votes
0
replies
1.3k
views
NOISeq: Need help with my data frame
R
noiseq
data.frame
7.8 years ago
aokoro
• 0
0
votes
0
replies
2.1k
views
Problem with heatmap by ComplexHeatmap
complexheatmap
Rstudio
NOISeq
8.1 years ago
Luiz
• 0
0
votes
3
replies
1.9k
views
Is the CPM filtering method from NOISeq unsupervised?
rnaseq
de analysis
gene filtering
noiseq
updated 8.2 years ago by
James W. MacDonald
68k • written 8.2 years ago by
Mau
▴ 50
0
votes
5
replies
4.7k
views
GC content and length bias correction with DESeq2 using cqn normalization factor matrix
deseq2
cqn
noiseq
updated 8.5 years ago by
Michael Love
43k • written 8.5 years ago by
glmazzo
▴ 10
0
votes
0
replies
1.5k
views
NOISeq error message while using ARSyNseq batch correction function
noiseq
batch effect
ARSyNseq
10.0 years ago
lina.faller
▴ 10
0
votes
0
replies
1.3k
views
Question: type of NOISeq package input file
RNASeq
NOISeq
RNASeq
NOISeq
12.7 years ago
Guest User
★ 13k
0
votes
2
replies
3.2k
views
NOISeq initialization problem
NOISeq
NOISeq
updated 13.1 years ago by
Dan Tenenbaum
★ 8.2k • written 13.1 years ago by
Guest User
★ 13k
0
votes
4
replies
2.4k
views
NOISeq installation error
NOISeq
NOISeq
updated 13.1 years ago by
Sean Davis
21k • written 13.1 years ago by
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
1.4k
views
NOISeq-real input parameters
NOISeq
NOISeq
13.6 years ago
Guest User
★ 13k
17 results • Page
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Recent ...
Replies
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts
by
Michael Love
43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts
by
empty_mt
• 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts
by
Michael Love
43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
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