Bioconductor Noiseq

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823

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NOISeq withoutreplicate Noiseq

updated 16 months ago by ATpoint ★ 4.6k • written 16 months ago by Rutuja • 0

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931

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RNAseq RNASeqData NOISeq

2.6 years ago • updated 2.5 years ago Pratibha ▴ 10

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1.1k

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DESeq2 NOISeq edgeR

updated 4.0 years ago by ATpoint ★ 4.6k • written 4.0 years ago by Themis • 0

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2.1k

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deseq2 noiseq lowcounts rnaseq

updated 2.9 years ago by Michael Love 43k • written 4.3 years ago by andreia ▴ 10

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938

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noiseq RNA-seq quality control

updated 7 months ago by baptiste.bidon • 0 • written 5.3 years ago by Arindam ▴ 80

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807

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software error NOISeq

5.5 years ago jledmondson • 0

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1.0k

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noiseq rsubread tophat bowtie bowtie2

5.5 years ago Marcelo Laia ▴ 450

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1.1k

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noiseq logfoldchange

6.7 years ago Aurora ▴ 20

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1.2k

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R noiseq data.frame

6.9 years ago aokoro • 0

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1.8k

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complexheatmap Rstudio NOISeq

7.3 years ago Luiz • 0

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1.7k

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rnaseq de analysis gene filtering noiseq

updated 7.4 years ago by James W. MacDonald 67k • written 7.4 years ago by Mau ▴ 50

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deseq2 cqn noiseq

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by glmazzo ▴ 10

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1.4k

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noiseq batch effect ARSyNseq

9.2 years ago lina.faller ▴ 10

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1.2k

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RNASeq NOISeq RNASeq NOISeq

11.8 years ago Guest User ★ 13k

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2.9k

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NOISeq NOISeq

updated 12.2 years ago by Dan Tenenbaum ★ 8.2k • written 12.2 years ago by Guest User ★ 13k

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NOISeq NOISeq

updated 12.2 years ago by Sean Davis 21k • written 12.2 years ago by Fatemehsadat Seyednasrollah ▴ 260

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1.2k

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NOISeq NOISeq

12.8 years ago Guest User ★ 13k

17 results • Page 1 of 1

Recent ...

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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