Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
oligoclasses
•
reset
0
votes
3
replies
1.6k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R
oligoClasses
Oligoclass
Bioconductor
Oligo
written 3.2 years ago by
tanya
• 0
2
votes
8
replies
1.2k
views
pdInfoBuilder created problematic package for Affymetrix chip tiling array
oligoClasses
oligo
pdInfoBuilder
2.8 years ago • updated 2.7 years ago
efoss
▴ 10
2
votes
6
replies
3.8k
views
Can't install package oligoClasses
R
oligoClasses
ff
updated 3.6 years ago by
Kevin Blighe
★ 3.9k • written 3.6 years ago by
salamandra
▴ 20
2
votes
2
replies
1.9k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges
oligoclasses
BiocGenerics
5.9 years ago
GENOMIC_region
• 0
0
votes
7
replies
1.7k
views
oligo and GenericPDInfo
affy
oligoclasses
oligo package
pdinfobuilder
annotationdbi
updated 6.8 years ago by
James W. MacDonald
65k • written 6.8 years ago by
Aedin Culhane
▴ 510
2
votes
1
reply
1.2k
views
Output of ArrayExpress() function
oligo
oligoclasses
arrayexpress
updated 7.2 years ago by
James W. MacDonald
65k • written 7.2 years ago by
ste0891
• 0
2
votes
4
replies
1.3k
views
getProbeInfo and exprs return matrices and data.frames of different dimensions
oligo
oligoclasses
affy
updated 7.5 years ago by
James W. MacDonald
65k • written 7.5 years ago by
mark.aaron.fisher
• 0
0
votes
2
replies
2.4k
views
Cannot install Oligo package
oligo
oligoclasses
7.7 years ago
Anna Dvorkin
▴ 40
0
votes
2
replies
1.8k
views
pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews
Annotation
Organism
biocViews
oligo
oligoClasses
BiocViews
BiocViews
Annotation
updated 9.0 years ago by
Jason Hubbard
▴ 20 • written 10.3 years ago by
Guilherme Rocha
▴ 40
0
votes
0
replies
1.5k
views
Error using oligo package with Affymetrix Arabidopsis Gene ST1.0 array data: paCalls() returns error 'vector would be too long'
oligo
oligoClasses
oligo
oligoClasses
10.3 years ago
Peter Crisp
▴ 10
0
votes
1
reply
1.5k
views
limma2annaffy
GO
GUI
annaffy
oligo
oligoClasses
KEGGREST
GO
GUI
annaffy
oligo
oligoClasses
KEGGREST
updated 10.3 years ago by
James W. MacDonald
65k • written 10.3 years ago by
Guest User
★ 13k
0
votes
8
replies
2.1k
views
vsn preprocess with oligo package
vsn
oligo
oligoClasses
vsn
oligo
oligoClasses
updated 11.3 years ago by
James W. MacDonald
65k • written 11.3 years ago by
José LÓPEZ
▴ 110
0
votes
4
replies
2.8k
views
Problems with 'affxparser' package
oligoClasses
oligoClasses
11.3 years ago
Valor Becerra, Luis Miguel
▴ 30
3
votes
4
replies
1.7k
views
cause 'memory not mapped' when use oligo
oligo
oligoClasses
oligo
oligoClasses
updated 11.6 years ago by
Benilton Carvalho
▴ 50 • written 11.6 years ago by
Ou, Jianhong
★ 1.3k
0
votes
4
replies
2.9k
views
Error : package slot missing from signature for generic
Biobase
lumi
oligoClasses
Biobase
lumi
oligoClasses
11.7 years ago
Mark Cowley
▴ 910
0
votes
2
replies
1.4k
views
pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Annotation
oligo
pdInfoBuilder
oligoClasses
Annotation
oligo
pdInfoBuilder
oligoClasses
updated 12.1 years ago by
Benilton Carvalho
★ 4.3k • written 12.1 years ago by
Groot, Philip de
▴ 630
0
votes
0
replies
1.3k
views
Question about using oligo and SNPchip for copy number analysis
SNP
Cancer
graph
oligo
SNPchip
oligoClasses
VanillaICE
crlmm
SNP
Cancer
graph
oligo
15.0 years ago
Min-Han Tan
▴ 40
0
votes
0
replies
866
views
Bioconductor Digest, Vol 68, Issue 7
oligo
pdInfoBuilder
oligoClasses
oligo
pdInfoBuilder
oligoClasses
15.6 years ago
Matt Settles
▴ 70
18 results • Page
1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
SamGG
▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
• 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Votes
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
Awards
• All
Scholar
to
James W. MacDonald
65k
Supporter
to
JKim
• 0
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Chris
• 0
Supporter
to
Jonathan
▴ 10
Locations
• All
United States,
11 minutes ago
Canada,
16 minutes ago
France,
17 minutes ago
United States,
38 minutes ago
United States,
39 minutes ago
Traffic: 1038 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6