Showing : oligoclasses • reset
0
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3
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2.1k
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Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 4.1 years ago by • 0
2
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8
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1.6k
views
pdInfoBuilder created problematic package for Affymetrix chip tiling array
oligoClasses oligo pdInfoBuilder
3.7 years ago • updated 3.6 years ago efoss ▴ 10
2
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6
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4.3k
views
Can't install package oligoClasses
R oligoClasses ff
updated 4.5 years ago by ★ 4.0k • written 4.5 years ago by ▴ 20
2
votes
2
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2.4k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges oligoclasses BiocGenerics
6.8 years ago GENOMIC_region • 0
0
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7
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2.1k
views
oligo and GenericPDInfo
affy oligoclasses oligo package pdinfobuilder annotationdbi
updated 7.7 years ago by 68k • written 7.7 years ago by ▴ 510
2
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1
reply
1.4k
views
Output of ArrayExpress() function
oligo oligoclasses arrayexpress
updated 8.1 years ago by 68k • written 8.1 years ago by • 0
2
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4
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1.6k
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getProbeInfo and exprs return matrices and data.frames of different dimensions
oligo oligoclasses affy
updated 8.4 years ago by 68k • written 8.4 years ago by • 0
0
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2
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2.7k
views
Cannot install Oligo package
oligo oligoclasses
8.6 years ago Anna Dvorkin ▴ 40
0
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2
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2.1k
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pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews Annotation Organism biocViews oligo oligoClasses BiocViews BiocViews Annotation
updated 9.9 years ago by ▴ 20 • written 11.2 years ago by ▴ 40
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0
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1.7k
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Error using oligo package with Affymetrix Arabidopsis Gene ST1.0 array data: paCalls() returns error 'vector would be too long'
oligo oligoClasses oligo oligoClasses
11.2 years ago Peter Crisp ▴ 10
0
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1
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1.7k
views
limma2annaffy
GO GUI annaffy oligo oligoClasses KEGGREST GO GUI annaffy oligo oligoClasses KEGGREST
updated 11.2 years ago by 68k • written 11.2 years ago by ★ 13k
0
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8
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2.4k
views
vsn preprocess with oligo package
vsn oligo oligoClasses vsn oligo oligoClasses
updated 12.2 years ago by 68k • written 12.2 years ago by ▴ 110
0
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4
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3.0k
views
Problems with 'affxparser' package
oligoClasses oligoClasses
12.2 years ago Valor Becerra, Luis Miguel ▴ 30
3
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4
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2.0k
views
cause 'memory not mapped' when use oligo
oligo oligoClasses oligo oligoClasses
updated 12.5 years ago by ▴ 50 • written 12.5 years ago by ★ 1.3k
0
votes
4
replies
3.3k
views
Error : package slot missing from signature for generic
Biobase lumi oligoClasses Biobase lumi oligoClasses
12.7 years ago • updated 12.6 years ago Mark Cowley ▴ 910
0
votes
2
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1.6k
views
pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Annotation oligo pdInfoBuilder oligoClasses Annotation oligo pdInfoBuilder oligoClasses
updated 13.0 years ago by ★ 4.3k • written 13.0 years ago by ▴ 630
0
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0
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1.5k
views
Question about using oligo and SNPchip for copy number analysis
SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo
15.9 years ago Min-Han Tan ▴ 40
0
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1
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1.1k
views
Bioconductor Digest, Vol 68, Issue 7
oligo pdInfoBuilder oligoClasses oligo pdInfoBuilder oligoClasses
written 16.5 years ago by ▴ 70
18 results • Page 1 of 1
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Answer: best way to grouping GSM belonging to different datasets (with different platfor by James W. MacDonald 68k
The only defensible way is to make comparisons within experiments and then do a meta-analysis. But that assumes you have identified multipl…
Comment: DESeq2 estimateSizeFactors with control genes by sofia.rigou • 0
I am also trying to use this function to estimate sizefactor based on RT-dPCR data but estimateSizeFactor only takes integers. Should I mul…
Comment: DiffBind custom normalization factor by Abbie • 0
Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k
All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…
Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0
Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…
Votes
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
Data preparation and Machine learning on time course RNAseq data
Answer: Use of org.Rn.eg.db with GRCr8 reference genome
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