Showing : oligoclasses • reset
0
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Custom CDF creation for HTA 2.0 array using GTF annotation
oligo oligoClasses pdInfoBuilder affycoretools affyio
6 months ago Seymoo • 0
0
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3
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2.4k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 4.7 years ago by • 0
2
votes
8
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1.9k
views
pdInfoBuilder created problematic package for Affymetrix chip tiling array
oligoClasses oligo pdInfoBuilder
4.3 years ago efoss ▴ 10
2
votes
6
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4.5k
views
Can't install package oligoClasses
R oligoClasses ff
updated 5.2 years ago by ★ 4.0k • written 5.2 years ago by ▴ 20
2
votes
2
replies
2.6k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges oligoclasses BiocGenerics
7.4 years ago GENOMIC_region • 0
0
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7
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2.4k
views
oligo and GenericPDInfo
affy oligoclasses oligo package pdinfobuilder annotationdbi
updated 8.3 years ago by 68k • written 8.3 years ago by ▴ 510
2
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1
reply
1.6k
views
Output of ArrayExpress() function
oligo oligoclasses arrayexpress
updated 8.8 years ago by 68k • written 8.8 years ago by • 0
2
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4
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1.8k
views
getProbeInfo and exprs return matrices and data.frames of different dimensions
oligo oligoclasses affy
updated 9.0 years ago by 68k • written 9.0 years ago by • 0
0
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2
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2.9k
views
Cannot install Oligo package
oligo oligoclasses
9.3 years ago Anna Dvorkin ▴ 40
0
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2
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2.3k
views
pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews Annotation Organism biocViews oligo oligoClasses BiocViews BiocViews Annotation
updated 10.5 years ago by ▴ 20 • written 11.8 years ago by ▴ 40
0
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0
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1.8k
views
Error using oligo package with Affymetrix Arabidopsis Gene ST1.0 array data: paCalls() returns error 'vector would be too long'
oligo oligoClasses oligo oligoClasses
11.8 years ago Peter Crisp ▴ 10
0
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1
reply
1.8k
views
limma2annaffy
GO GUI annaffy oligo oligoClasses KEGGREST GO GUI annaffy oligo oligoClasses KEGGREST
updated 11.9 years ago by 68k • written 11.9 years ago by ★ 13k
0
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8
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2.7k
views
vsn preprocess with oligo package
vsn oligo oligoClasses vsn oligo oligoClasses
updated 12.8 years ago by 68k • written 12.8 years ago by ▴ 110
0
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4
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3.2k
views
Problems with 'affxparser' package
oligoClasses oligoClasses
12.8 years ago Valor Becerra, Luis Miguel ▴ 30
3
votes
4
replies
2.2k
views
cause 'memory not mapped' when use oligo
oligo oligoClasses oligo oligoClasses
updated 13.1 years ago by ▴ 50 • written 13.1 years ago by ★ 1.3k
0
votes
4
replies
3.5k
views
Error : package slot missing from signature for generic
Biobase lumi oligoClasses Biobase lumi oligoClasses
13.3 years ago Mark Cowley ▴ 910
0
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2
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1.8k
views
pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Annotation oligo pdInfoBuilder oligoClasses Annotation oligo pdInfoBuilder oligoClasses
updated 13.6 years ago by ★ 4.3k • written 13.7 years ago by ▴ 630
0
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0
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1.6k
views
Question about using oligo and SNPchip for copy number analysis
SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo
16.5 years ago Min-Han Tan ▴ 40
0
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1
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1.2k
views
Bioconductor Digest, Vol 68, Issue 7
oligo pdInfoBuilder oligoClasses oligo pdInfoBuilder oligoClasses
written 17.1 years ago by ▴ 70
19 results • Page 1 of 1
Recent ...
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Comment: After running samtools, the featureCounts command crashed. by eja.gssssse.r.m • 0
The buffer overflow detected error in your featureCount step usually indicates that the program is trying to write more data into memory …
Comment: gene Set with high AUC score but no cells assigned to cell type by eja.gssssse.r.m • 0
It sounds like your AUCell results may be showing high AUC scores without cell assignment due to thresholding or scoring cutoffs. Think of …
Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0
Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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