Bioconductor PcaExplorer

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DESeq2 pcaExplorer

updated 6 months ago by BioinfGuru ▴ 70 • written 7 months ago by Eric Katagirya • 0

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DESeq2 RNASeq PrincipalComponent pcaExplorer

written 2.1 years ago by James • 0

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PCAtools pcaExplorer pcaMethods

updated 2.5 years ago by Federico Marini ▴ 180 • written 2.5 years ago by m610110001 • 0

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PCAtools edgeR pcaExplorer RNASeq RNAseq123

2.7 years ago Alan • 0

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GeneTonic org.Sc.sgd.db pcaExplorer topGO EnrichmentBrowser

updated 2.9 years ago by Federico Marini ▴ 180 • written 2.9 years ago by chase.mateusiak • 0

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DESeq2 pcaExplorer

updated 3.8 years ago by Michael Love 43k • written 3.8 years ago by vanbelj ▴ 30

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EDA pcaExplorer PCAtools PCA

updated 3.0 years ago by Miguel ▴ 20 • written 4.3 years ago by k.vitting.seerup ▴ 120

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annotation go pcaExplorer AnnotationForge

updated 5.8 years ago by James W. MacDonald 67k • written 5.8 years ago by psutton • 0

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pcaexplorer genespca deseq2

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by sally_b86 • 0

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pca2go pcaexplorer

updated 7.3 years ago by Federico Marini ▴ 180 • written 7.3 years ago by reubenmcgregor88 • 0

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deseq2 pcaexplorer

7.3 years ago reubenmcgregor88 • 0

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pcaExplorer pca

updated 8.1 years ago by Federico Marini ▴ 180 • written 8.1 years ago by swaegers.janne • 0

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Answer: Error in get_anno_data(ontology) : ontology not supported yet... by Guido Hooiveld ★ 4.1k

Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…

Comment: Build error on kunpeng2 Linux aarch64 by martin.grigorov ▴ 10

Hi, There was a problem with `icu` and because of that the (r)curl library was not installed. The system/OS curl library is one version ol…

Answer: Standardization of rlog transformed counts before PCA by ATpoint ★ 4.6k

I guess you mean scaling in terms of Z-scoring? There are plenty of posts towards scaling in PCA both here on Bioconductor and in other com…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Tim Peters ▴ 200

Also, re DMR.plot(), yes the understanding is that all DMRs from EPICv2 should be plotted in hg38. I've left that implied for the user sinc…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Tim Peters ▴ 200

Hi Xiaofei, Thanks for this. If your data is from 450K, you'll have to call your DMRs in hg19, and then lift the DMR ranges over to hg38 p…

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Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

DiffBind giving different results from dba.report() and dba.analyze(..., bRetrieveAnalysis=TRUE)

Answer: Deseq2 Design

Answer: Fold change calculation in Diffbind vs. DESEQ2?

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Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k