Bioconductor PcaExplorer

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DESeq2 pcaExplorer

updated 15 months ago by BioinfGuru ▴ 70 • written 16 months ago by Eric Katagirya • 0

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DESeq2 RNASeq PrincipalComponent pcaExplorer

written 2.8 years ago by James • 0

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PCAtools pcaExplorer pcaMethods

updated 3.2 years ago by Federico Marini ▴ 180 • written 3.2 years ago by m610110001 • 0

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PCAtools edgeR pcaExplorer RNASeq RNAseq123

3.4 years ago Alan • 0

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GeneTonic org.Sc.sgd.db pcaExplorer topGO EnrichmentBrowser

updated 3.6 years ago by Federico Marini ▴ 180 • written 3.6 years ago by chase.mateusiak • 0

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DESeq2 pcaExplorer

updated 4.5 years ago by Michael Love 43k • written 4.5 years ago by vanbelj ▴ 30

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EDA pcaExplorer PCAtools PCA

updated 3.7 years ago by Miguel ▴ 20 • written 5.1 years ago by k.vitting.seerup ▴ 120

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annotation go pcaExplorer AnnotationForge

updated 6.5 years ago by James W. MacDonald 68k • written 6.5 years ago by psutton • 0

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1.6k

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pcaexplorer genespca deseq2

updated 7.8 years ago by Michael Love 43k • written 7.8 years ago by sally_b86 • 0

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pca2go pcaexplorer

updated 8.0 years ago by Federico Marini ▴ 180 • written 8.1 years ago by reubenmcgregor88 • 0

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deseq2 pcaexplorer

8.1 years ago reubenmcgregor88 • 0

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pcaExplorer pca

updated 8.8 years ago by Federico Marini ▴ 180 • written 8.8 years ago by swaegers.janne • 0

12 results • Page 1 of 1

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Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k

There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

What you describe sounds a good approach to me. I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…

Comment: Average biological replicates in RNA-seq by boczniak767 ▴ 740

@atpoint Should I first standardise data and then average replicates?

Comment: 3-factor DESeq2 trime-series analysis by gogeni5529 • 0

Thans you @swbarnes2 for the answer. I can see why trying to include all three parameters might be difficult to interpret. But we're inte…

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Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

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Popular Question to James W. MacDonald 68k

Popular Question to Assa Yeroslaviz ★ 1.5k