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pd.hta.2.0
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0
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2
replies
1.7k
views
pd.hta.2.0 not installed with Bioconductor 3.5 BiocInstaller 1.26.0 R 3.4.1
package installation
pd.hta.2.0
7.2 years ago
alexander2073
• 0
0
votes
2
replies
2.1k
views
Reading CEL files using Oligo and pd.hta.2.0 packages in Windows 7
oligo
pd.hta.2.0
CEL
R
windows 7
7.2 years ago
ladhikari
• 0
2
votes
3
replies
1.6k
views
Filtering of lowly expressed probes in HTA 2.0 using new pd.hta.2.0 version 3.12.2
pd.hta.2.0
hta2.0
affycoretools
updated 7.2 years ago by
James W. MacDonald
67k • written 7.2 years ago by
relathman
▴ 20
2
votes
13
replies
3.5k
views
problems filtering antigenomic probes from HTA 2.0
pd.hta.2.0
R
8.3 years ago • updated 7.8 years ago
s.munster
▴ 40
5
votes
9
replies
6.1k
views
Pre-processing of HTA 2.0 array
pd.hta.2.0
updated 8.0 years ago by
James W. MacDonald
67k • written 8.0 years ago by
pbachali
▴ 50
3
votes
5
replies
2.6k
views
Fail to install "AnnotationHub"
software error
annotation
genefilter
pd.hta.2.0
updated 8.1 years ago by
Martin Morgan
25k • written 8.1 years ago by
Lian Liu
▴ 20
0
votes
5
replies
1.3k
views
pd.hta.2.0 oddity, possible RSQLite bug?
oligo
rsqlite
pd.hta.2.0
updated 8.2 years ago by
James W. MacDonald
67k • written 8.2 years ago by
Vincent J. Carey, Jr.
6.7k
9
votes
2
replies
2.8k
views
How to deal with Affymetrix GeneChip probeids that map to multiple genes
hta20sttranscriptcluster.db
probe mapping
annotation
pd.hta.2.0
annotationdbi
updated 8.2 years ago by
James W. MacDonald
67k • written 8.2 years ago by
relathman
▴ 20
3
votes
3
replies
1.5k
views
Trouble annotating HTA microarray
hta
pd.hta.2.0
hta20sttranscriptcluster.db
updated 8.3 years ago by
James W. MacDonald
67k • written 8.3 years ago by
giroudpaul
▴ 40
3
votes
3
replies
2.9k
views
Problem using RMA Method in 'Oligo' with HTAFeatureset Objects
affymetrix microarrays
microarray
pd.hta.2.0
oligo
rma
updated 8.7 years ago by
James W. MacDonald
67k • written 8.7 years ago by
jennifer.drake
• 0
7
votes
16
replies
2.7k
views
Can "Glue Grant" arrays be processed with pd.hta.2.0?
pd.hta.2.0
ggh3
oligo
glue grant
updated 8.9 years ago by
James W. MacDonald
67k • written 8.9 years ago by
Robert Castelo
★ 3.4k
0
votes
1
reply
1.6k
views
HTA analysis at transcript level
pd.hta.2.0
transcript
differential gene expression
updated 9.0 years ago by
James W. MacDonald
67k • written 9.0 years ago by
jacorvar
▴ 40
1
vote
0
replies
2.5k
views
The current annotation for Affymetrix HTA 2.0 array is problematic
oligo
pdInfoBuilder
pd.hta.2.0
9.3 years ago
tangboyun
▴ 30
13 results • Page
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Comment: [How to construct a model.matrix ]
by
kyj2226
• 0
Thanks to you, I learn a lot. Many thanks, Yujin.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
by
rania.alanany
• 0
thank you for your advice, I posted separate post.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
by
Robert Castelo
★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results
by
ATpoint
★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ]
by
Gordon Smyth
51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Votes
Answer: [How to construct a model.matrix ]
C: DESeq2 baseMean values for each sample
C: DESeq2 baseMean values for each sample
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
A: Some questions for remove batch effect by using mnnCorrect
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