Bioconductor Proteomics

Showing : proteomics • reset

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2.9k

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differential expression proteomics

updated 8 months ago by ATpoint ★ 4.1k • written 6.3 years ago by cardin.julie • 0

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746

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Proteomics proDA MultipleComparison

8 months ago t.b.n.nguyen-9 • 0

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3.8k

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Proteomics NPX limma

updated 3 months ago by briankleiboeker • 0 • written 3.1 years ago by r.i.s.alnuwaysir ▴ 10

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610

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Proteomics RforProteomics ProteomicsWorkflow Spectra MassSpectrometryData

updated 9 months ago by Laurent Gatto 1.6k • written 9 months ago by mmvar • 0

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794

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Proteomics ProteoMM ProteomicsWorkflow

updated 9 months ago by mmvar • 0 • written 11 months ago by nkvnambiar • 0

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216

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Proteomics JobPosting SingleCell Spatial SpatialExperiment

8 weeks ago Peter Hickey ▴ 740

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201

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Proteomics ProteoMM ProteomicsWorkflow Proteome

written 5 months ago by ary.lech ▴ 10

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1.4k

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RNAseq deseq2 proteomics transcriptomics workshop News

written 5.2 years ago by Laurent Gatto 1.6k

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1.8k

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Proteomics DEP limma

written 2.8 years ago by barrypraveen • 0

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111

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DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq

updated 2 days ago by ATpoint ★ 4.1k • written 2 days ago by james.zhang20 • 0

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737

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RforProteomics Proteomics ProteomicsWorkflow

updated 9 months ago by Laurent Gatto 1.6k • written 9 months ago by mmvar • 0

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2.2k

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mass spectrometry proteomics metabolomics Tutorial

written 3.6 years ago by Johannes Rainer ★ 2.0k

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242

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Bioconductor Proteomics

5 months ago Joshua • 0

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452

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Proteomics DifferentialRegulation limma

8 months ago svlachavas ▴ 830

14 results • Page 1 of 1

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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

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Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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