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Gordon Smyth
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874
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9 months ago • updated 8 months ago
Eva
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332
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1.6k
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685
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713
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updated 11 months ago by
James W. MacDonald
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855
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115
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
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Poonam
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Hi Michael,
I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
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Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
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I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
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This part:
```
design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa)
colnames(design_intercept) <- c("AltSHP_LA","Al…
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