Bioconductor Rna-seq

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7.9k

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deseq2 edgeR rna-seq

updated 4 weeks ago by Elizabeth • 0 • written 8.9 years ago by gthm ▴ 30

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3.5k

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RNA-seq featureCounts ht-seq

written 3.8 years ago by ag1805x ▴ 80

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2.3k

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Spike-in RNASeqR DESeq2 Normalization rna-seq

updated 8 months ago by manuel.fernandez • 0 • written 2.1 years ago by cicely.day • 0

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2.3k

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isoformswitchanalyzeR rna-seq splice-variants

written 5.1 years ago by saddamhusain77 • 0

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1.7k

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GeneExpression GenomicFeatures RNA-Seq TPM

updated 8 months ago by Gordon Smyth 50k • written 8 months ago by gingergeiger22 • 0

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1.2k

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filtering RNA-Seq CPM edgeR filterByExpr

updated 12 months ago by Gordon Smyth 50k • written 12 months ago by mohammedtoufiq91 ▴ 10

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921

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correlation pearsoncorrelation rna-seq differential gene expression

updated 5 months ago by ATpoint ★ 4.1k • written 6.1 years ago by saad_k6 • 0

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897

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BatchEffect lfcshrink RNA-seq DESeq2

9 months ago Eva ▴ 10

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737

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RNA-seq DESeq2

7 months ago ar14g12 • 0

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725

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noiseq RNA-seq quality control

updated 5 hours ago by baptiste.bidon • 0 • written 4.7 years ago by ag1805x ▴ 80

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712

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rna-seq salmon fishpond swish

updated 11 months ago by Michael Love 42k • written 11 months ago by samuelcjx • 0

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699

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DEXSeq RNA-seq DESeq2

updated 8 months ago by Alejandro Reyes ★ 1.9k • written 8 months ago by Alice • 0

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371

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rna-seq edgeR

updated 4 weeks ago by Gordon Smyth 50k • written 6 weeks ago by Netanel • 0

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328

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RNA-Seq WGCNA Worms

6 months ago • updated 5 months ago davca • 0

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291

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rna-seq duplicateCorrelation limma voom

12 days ago • updated 11 days ago Dylan.Sheerin • 0

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264

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RNA-seq DESeq2

updated 16 days ago by ATpoint ★ 4.1k • written 18 days ago by Reza • 0

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192

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DESeq2 PCAplot RNA-Seq DesignModel

updated 1 day ago by Michael Love 42k • written 4 days ago by shaunpeterson • 0

17 results • Page 1 of 1

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Answer: recount3 problem downloading data from source sra by Leonardo Collado Torres ★ 1.0k

Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…

Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman by minardsmitha ▴ 10

Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …

Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k

The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…

Comment: ChAMP installation issue by shepherl 3.9k

We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…

Comment: How to arrange multiple plots into one page in NOISeq? by baptiste.bidon • 0

After facing the same problem, I realise that you can direct your plot in the matrix with the *par()* option `par(..., mfg = c(1,2))`. If i…

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how to control age and gender effect in expression data using DESeq2

Answer: Error retrieving ensembl gene id using biomaRt...

Comment: LRT, more than two conditions and pairwise comparisons

Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

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Scholar to Mike Smith ★ 6.5k

Popular Question to mohammedtoufiq91 ▴ 10