Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
rna-seq
•
reset
2
votes
3
replies
183
views
Too many significant genes when integrating gtex and tcga
RNA-seq
DESeq2
updated 2 days ago by
ATpoint
★ 4.1k • written 4 days ago by
Reza
• 0
3
votes
3
replies
340
views
permutation test in edgeR
rna-seq
edgeR
updated 17 days ago by
Gordon Smyth
50k • written 4 weeks ago by
Netanel
• 0
9
votes
12
replies
7.8k
views
Multi factor design edgeR/Deseq2
deseq2
edgeR
rna-seq
updated 19 days ago by
Elizabeth
• 0 • written 8.8 years ago by
gthm
▴ 30
0
votes
1
reply
910
views
Human genes correlation to Bacterial genes
correlation
pearsoncorrelation
rna-seq
differential gene expression
updated 4 months ago by
ATpoint
★ 4.1k • written 6.1 years ago by
saad_k6
• 0
0
votes
2
replies
315
views
WGCNA less samples
RNA-Seq
WGCNA
Worms
5 months ago
davca
• 0
0
votes
4
replies
717
views
DESeq2 : standardising variation between treatments
RNA-seq
DESeq2
7 months ago • updated 6 months ago
ar14g12
• 0
0
votes
2
replies
3.5k
views
Dealing with multi-overlapping and multi-mapping reads
RNA-seq
featureCounts
ht-seq
written 3.8 years ago by
ag1805x
▴ 80
2
votes
3
replies
1.6k
views
TPM from STAR mapped counts
GeneExpression
GenomicFeatures
RNA-Seq
TPM
updated 7 months ago by
Gordon Smyth
50k • written 7 months ago by
gingergeiger22
• 0
0
votes
3
replies
661
views
RNAseq (Deseq2 and Dexseq2) analysis on two time points with expected same effect
DEXSeq
RNA-seq
DESeq2
updated 8 months ago by
Alejandro Reyes
★ 1.9k • written 8 months ago by
Alice
• 0
0
votes
2
replies
2.3k
views
Incorporating spike-ins to rna-seq analysis
Spike-in
RNASeqR
DESeq2
Normalization
rna-seq
updated 8 months ago by
manuel.fernandez
• 0 • written 2.1 years ago by
cicely.day
• 0
3
votes
4
replies
879
views
lfcShrink() and batch effects in DESeq2
BatchEffect
lfcshrink
RNA-seq
DESeq2
9 months ago
Eva
▴ 10
0
votes
10
replies
2.2k
views
Error in reading data on isoformswitchanalyzeR
isoformswitchanalyzeR
rna-seq
splice-variants
written 5.1 years ago by
saddamhusain77
• 0
0
votes
3
replies
691
views
Fishpond with unbalanced dataset
rna-seq
salmon
fishpond
swish
updated 10 months ago by
Michael Love
42k • written 10 months ago by
samuelcjx
• 0
5
votes
7
replies
1.2k
views
Question about setting threshold using filtering by expression on genes in edgeR
filtering
RNA-Seq
CPM
edgeR
filterByExpr
updated 11 months ago by
Gordon Smyth
50k • written 11 months ago by
mohammedtoufiq91
▴ 10
0
votes
2
replies
1.2k
views
Pathway analysis using GAGE returns all NA values
gage
rna-seq
pathwayanalysis
updated 12 months ago by
Rob
• 0 • written 3.5 years ago by
microPhD
• 0
0
votes
3
replies
860
views
Why is RNA-Seq library size not constant among samples?
RNA-Seq
sequencer
library_size
sequency_depth
multiplexing
offtopic
updated 12 months ago by
James W. MacDonald
65k • written 12 months ago by
FedeXander
• 0
0
votes
3
replies
717
views
Is the gene-specific PCR efficiency a serious concern for intrasample comparisons in RNA-Seq?
RNA-Seq
normalization
PCR_efficiency
bias
intrasample_comparison
updated 12 months ago by
James W. MacDonald
65k • written 12 months ago by
FedeXander
• 0
17 results • Page
1 of 1
Recent ...
Replies
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
For visualization purposes you can draw an horizontal line at the p-value cutoff that meets the experiment-wide FDR cutoff. For instance, i…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Ask yourself the question how a gene that is exactly the same everywhere adds anything to any analysis. Heatmaps usually take DEGs to infer…
Comment: Extremely small p-values using Limma for proteomic data
by
ATpoint
★ 4.1k
I'd argue that most users, especially the general reader of a paper is interested in a visual representation of the data **and** applied cu…
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
I'd also add that plotting adjusted P-values in the y-axis of the volcano plot is not the recommended way to produce a volcano plot. This h…
Comment: Cannot connect to ExperimentHub server
by
Jiayu
• 0
Many thanks and it also resolved the same issue for me!
Votes
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Awards
• All
Scholar
to
Robert Castelo
★ 3.3k
Popular Question
to
Gyan Prakash Mishra
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
WouterDeCoster
▴ 130
Scholar
to
Michael Love
42k
Locations
• All
United Kingdom,
just now
Pakistan,
1 minute ago
United States,
4 minutes ago
Barcelona/Universitat Pompeu Fabra,
5 minutes ago
Sweden,
15 minutes ago
Traffic: 616 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6