Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
rnaseq123
•
reset
0
votes
0
replies
206
views
Assistance with Bulk RNA-seq Data Analysis Including Random Effect (`duplicateCorrelation` from `limma`)
limma
RNAseq123
7 weeks ago • updated 6 weeks ago
tim.meese
• 0
1
vote
2
replies
440
views
Improving the design matrices vignette in RNAseq123
RNAseq123
6 months ago
Lluís Revilla Sancho
▴ 760
1
vote
1
reply
608
views
Differential gene expression analysis
RNASeqData
RNAseq123
updated 11 months ago by
ATpoint
★ 4.5k • written 11 months ago by
kaurprab
• 0
0
votes
2
replies
799
views
Deseq2 paird analysis in a cohort mixed of paired and unpaired samples
DESeq2
RNAseq123
21 months ago
fatemeh.peimani
• 0
0
votes
3
replies
1.2k
views
DESeq2 Statistic - Padj NA
DESeq2
RNAseq123
rnaseq
deseq2
metatranscriptomic
updated 23 months ago by
Michael Love
42k • written 23 months ago by
irish.prg
• 0
1
vote
6
replies
4.4k
views
KEGG enrichment analysis for non model organism
RNAseq123
23 months ago
afsanarupa1
• 0
2
votes
5
replies
1.3k
views
Can we massively improve RNA-Seq results by slightly reducing the counts in it?
edgeR
RNAseq123
updated 23 months ago by
Gordon Smyth
51k • written 24 months ago by
Istvan Albert
▴ 50
0
votes
1
reply
1.9k
views
Confused about understanding the output and statistics of BAM file after STAR aligning
RNAseq123
VariantFiltering
Alignment
VariantAnnotation
updated 2.0 years ago by
James W. MacDonald
67k • written 2.0 years ago by
Mohamed
▴ 30
1
vote
1
reply
917
views
Confused about design for RNA seq experiment
RNAseq
ExperimentData
RNAseq123
RNA
ExperimentalDesign
updated 2.2 years ago by
ATpoint
★ 4.5k • written 2.2 years ago by
Mohamed
▴ 30
0
votes
0
replies
703
views
Plotting a line plot for genes across 4-species
RNAseq123
2.3 years ago
Mohamed
▴ 30
2
votes
1
reply
1.2k
views
Error in RNAseq123 analysis, unexpected symbol.
RNAseq123
Rna
updated 2.4 years ago by
Gordon Smyth
51k • written 2.4 years ago by
Mikołaj Mierzejewski
• 0
5
votes
6
replies
3.2k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools
edgeR
pcaExplorer
RNASeq
RNAseq123
2.6 years ago
Alan
• 0
0
votes
1
reply
966
views
python and R
snpeff
python
tophat
r
RNAseq123
updated 3.3 years ago by
Kevin Blighe
★ 4.0k • written 3.3 years ago by
kusum
• 0
1
vote
1
reply
1.8k
views
featureCounts running too long
RNAseq123
updated 9 months ago by
difraiadomenico
• 0 • written 3.7 years ago by
demirkalecy
▴ 10
0
votes
0
replies
658
views
Circular RNA
CircularRNA
RNASeq
RNAseq123
3.8 years ago
rpokhre2
• 0
1
vote
3
replies
5.3k
views
Using TMM normalized counts in Deseq2
RNAseq123
written 3.9 years ago by
mmicky5050
• 0
12
votes
4
replies
4.8k
views
differential expression analysis of htseq data with edgeR/voom
voom
htseq
edgeR
limma
RNASeq123
updated 5.9 years ago by
Gordon Smyth
51k • written 7.4 years ago by
wd
▴ 30
17 results • Page
1 of 1
Recent ...
Replies
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
by
Robert Castelo
★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results
by
ATpoint
★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ]
by
Gordon Smyth
51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
by
rania.alanany
• 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model
by
abadgerw
• 0
@gabrielhoffman any insight?
Votes
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Awards
• All
Popular Question
to
prabin.dm
• 0
Popular Question
to
Robert Castelo
★ 3.4k
Popular Question
to
Michael Stadler
▴ 350
Scholar
to
ATpoint
★ 4.5k
Commentator
to
James W. MacDonald
67k
Locations
• All
France,
1 hour ago
Australia/Melbourne/Monash University Bioinformatics Platform,
1 hour ago
United States,
2 hours ago
EMBL Heidelberg,
2 hours ago
United States,
2 hours ago
Traffic: 420 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6