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rnaseqrdata
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1
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4
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753
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RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA
gene
RNASeqRData
edgeR
geneontology
17 months ago
faiza
• 0
1
vote
3
replies
629
views
What should I do with RNA-Seq data to get a gene that work?
find
RNASeqRData
updated 17 months ago by
ATpoint
★ 4.0k • written 17 months ago by
yuhang
• 0
1
vote
4
replies
1.4k
views
merge TPM values for same geneID
RNASeqRData
TPM
updated 18 months ago by
ATpoint
★ 4.0k • written 18 months ago by
prashali.bansal
▴ 10
0
votes
0
replies
449
views
how to create PHENO_DATA
RNASeq
RNASeqData
RNASeqRData
18 months ago
marymshahi2021
• 0
0
votes
1
reply
564
views
DeSeq2 timecourse analysis
RNAseqRData
DeSeq2
updated 24 months ago by
Michael Love
41k • written 24 months ago by
Hannah
• 0
0
votes
17
replies
3.0k
views
results(dds) error: couldn't find results. you should first run DESeq()
RNASeqRData
updated 2.0 years ago by
Michael Love
41k • written 2.1 years ago by
beslinail
• 0
1
vote
1
reply
758
views
edgeR for SDE analysis
RNASeqRData
edgeR
RNASeqR
RNASeqData
updated 2.1 years ago by
Gordon Smyth
50k • written 2.1 years ago by
vikycairoli
• 0
1
vote
2
replies
840
views
Is 100K genes too many to run ComBat_seq on?
RNASeqRData
combat_Seq
BatchEffect
2.5 years ago • updated 2.2 years ago
zeegzaag
• 0
0
votes
1
reply
840
views
Limma Voom Design and Contrast Matrix- Can my parameter also be a factor?
RNASeqRData
limma
RNASeq
RNASeqR
updated 3.0 years ago by
Gordon Smyth
50k • written 3.0 years ago by
Rita
• 0
2
votes
2
replies
2.6k
views
How to download KEGG pathways for list of enriched genes
RNASeqRData
GO
3.1 years ago
Wuschel
▴ 10
0
votes
0
replies
712
views
display .CT files in a BioC package
RNAinteract
rnaseqGene
RNASeqRData
rnaseqcomp
3.1 years ago
Bogdan
▴ 670
4
votes
4
replies
1.0k
views
DEseq2: working with unbalanced number of sample in tumor study?
Deseq2
RNASeqRData
unbalancedsamplesize
updated 22 months ago by
Michael Love
41k • written 3.1 years ago by
Cihat
• 0
1
vote
5
replies
2.0k
views
How can I use bioconductor and Deseq2 in linux ubuntu 18
RiboProfiling
DESeq2
Bioconductor
RNASeqRData
updated 17 months ago by
Kevin Blighe
★ 3.9k • written 3.2 years ago by
Taufiq
• 0
13 results • Page
1 of 1
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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