Bioconductor Rnaseqrdata

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1.4k

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microRNA gene RNASeqRData edgeR geneontology

3.0 years ago faiza • 0

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1.1k

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find RNASeqRData

updated 3.0 years ago by ATpoint ★ 5.0k • written 3.0 years ago by yuhang • 0

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2.4k

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RNASeqRData TPM

updated 3.1 years ago by ATpoint ★ 5.0k • written 3.1 years ago by prashali.bansal ▴ 10

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723

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RNASeq RNASeqData RNASeqRData

3.1 years ago marymshahi2021 • 0

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949

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RNAseqRData DeSeq2

updated 3.6 years ago by Michael Love 43k • written 3.6 years ago by Hannah • 0

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4.8k

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RNASeqRData

updated 3.6 years ago by Michael Love 43k • written 3.6 years ago by beslinail • 0

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RNASeqRData edgeR RNASeqR RNASeqData

updated 3.7 years ago by Gordon Smyth 53k • written 3.7 years ago by vikycairoli • 0

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1.3k

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RNASeqRData combat_Seq BatchEffect

4.1 years ago • updated 3.8 years ago zeegzaag • 0

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1.2k

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RNASeqRData limma RNASeq RNASeqR

updated 4.6 years ago by Gordon Smyth 53k • written 4.6 years ago by Rita • 0

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3.7k

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RNASeqRData GO

4.7 years ago Wuschel ▴ 10

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1.1k

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RNAinteract rnaseqGene RNASeqRData rnaseqcomp

4.7 years ago Bogdan ▴ 670

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1.6k

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Deseq2 RNASeqRData unbalancedsamplesize

updated 3.4 years ago by Michael Love 43k • written 4.7 years ago by Cihat • 0

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2.8k

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RiboProfiling DESeq2 Bioconductor RNASeqRData

updated 3.0 years ago by Kevin Blighe ★ 4.0k • written 4.7 years ago by Taufiq • 0

13 results • Page 1 of 1

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Comment: deseq2 filter the low counts by empty_mt • 0

Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…

Comment: DESeq2 interactions by Michael Love 43k

GPT even v4 gives pretty good answers to DESeq2 questions that are similar to those already posted on the support site. I've also noticed …

Answer: Important: Bioconductor Release 3.22 Delayed by shepherl 4.2k

We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you

Comment: bake() and cool() resulting in an empty table by Francesc • 0

Hi Catherine, thanks so much for using dar and for reporting this bug! We have identified the issue and pushed a fix to the dar repo (PR #…

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Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

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