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rnaseqrdata
•
reset
1
vote
4
replies
1.7k
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RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA
gene
RNASeqRData
edgeR
geneontology
3.3 years ago
faiza
• 0
1
vote
3
replies
1.2k
views
What should I do with RNA-Seq data to get a gene that work?
find
RNASeqRData
updated 3.3 years ago by
ATpoint
★ 5.0k • written 3.3 years ago by
yuhang
• 0
1
vote
4
replies
2.6k
views
merge TPM values for same geneID
RNASeqRData
TPM
updated 3.3 years ago by
ATpoint
★ 5.0k • written 3.4 years ago by
prashali.bansal
▴ 10
0
votes
0
replies
785
views
how to create PHENO_DATA
RNASeq
RNASeqData
RNASeqRData
3.4 years ago
marymshahi2021
• 0
0
votes
1
reply
1.0k
views
DeSeq2 timecourse analysis
RNAseqRData
DeSeq2
updated 3.8 years ago by
Michael Love
43k • written 3.8 years ago by
Hannah
• 0
0
votes
17
replies
5.0k
views
results(dds) error: couldn't find results. you should first run DESeq()
RNASeqRData
updated 3.9 years ago by
Michael Love
43k • written 3.9 years ago by
beslinail
• 0
1
vote
1
reply
1.3k
views
edgeR for SDE analysis
RNASeqRData
edgeR
RNASeqR
RNASeqData
updated 3.9 years ago by
Gordon Smyth
53k • written 3.9 years ago by
vikycairoli
• 0
1
vote
2
replies
1.4k
views
Is 100K genes too many to run ComBat_seq on?
RNASeqRData
combat_Seq
BatchEffect
4.3 years ago • updated 4.1 years ago
zeegzaag
• 0
0
votes
1
reply
1.3k
views
Limma Voom Design and Contrast Matrix- Can my parameter also be a factor?
RNASeqRData
limma
RNASeq
RNASeqR
updated 4.8 years ago by
Gordon Smyth
53k • written 4.8 years ago by
Rita
• 0
2
votes
2
replies
4.0k
views
How to download KEGG pathways for list of enriched genes
RNASeqRData
GO
4.9 years ago
Wuschel
▴ 10
0
votes
0
replies
1.2k
views
display .CT files in a BioC package
RNAinteract
rnaseqGene
RNASeqRData
rnaseqcomp
5.0 years ago
Bogdan
▴ 670
4
votes
4
replies
1.7k
views
DEseq2: working with unbalanced number of sample in tumor study?
Deseq2
RNASeqRData
unbalancedsamplesize
updated 3.7 years ago by
Michael Love
43k • written 5.0 years ago by
Cihat
• 0
1
vote
5
replies
3.0k
views
How can I use bioconductor and Deseq2 in linux ubuntu 18
RiboProfiling
DESeq2
Bioconductor
RNASeqRData
updated 3.3 years ago by
Kevin Blighe
★ 4.0k • written 5.0 years ago by
Taufiq
• 0
13 results • Page
1 of 1
Recent ...
Replies
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC
by
Ben
• 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis
by
James W. MacDonald
68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
varying.mastodon.isyn
• 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency)
by
Marina
• 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error
by
ansley.r.burtch
• 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Votes
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
Answer: Confused about the CPM and TMM normalization in edgeR
A: DESeq2 - VST eliminates zero values
Comment: Normalise to a housekeeping gene in DESEq2
Comment: limpa analysis advice
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