Bioconductor Rnaseqrdata

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microRNA gene RNASeqRData edgeR geneontology

2.5 years ago faiza • 0

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find RNASeqRData

updated 2.5 years ago by ATpoint ★ 4.8k • written 2.5 years ago by yuhang • 0

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RNASeqRData TPM

updated 2.6 years ago by ATpoint ★ 4.8k • written 2.6 years ago by prashali.bansal ▴ 10

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RNASeq RNASeqData RNASeqRData

2.6 years ago marymshahi2021 • 0

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RNAseqRData DeSeq2

updated 3.1 years ago by Michael Love 43k • written 3.1 years ago by Hannah • 0

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RNASeqRData

updated 3.1 years ago by Michael Love 43k • written 3.1 years ago by beslinail • 0

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RNASeqRData edgeR RNASeqR RNASeqData

updated 3.2 years ago by Gordon Smyth 52k • written 3.2 years ago by vikycairoli • 0

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RNASeqRData combat_Seq BatchEffect

3.6 years ago • updated 3.3 years ago zeegzaag • 0

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RNASeqRData limma RNASeq RNASeqR

updated 4.1 years ago by Gordon Smyth 52k • written 4.1 years ago by Rita • 0

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RNASeqRData GO

4.2 years ago Wuschel ▴ 10

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RNAinteract rnaseqGene RNASeqRData rnaseqcomp

4.2 years ago Bogdan ▴ 670

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Deseq2 RNASeqRData unbalancedsamplesize

updated 2.9 years ago by Michael Love 43k • written 4.2 years ago by Cihat • 0

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RiboProfiling DESeq2 Bioconductor RNASeqRData

updated 2.5 years ago by Kevin Blighe ★ 4.0k • written 4.2 years ago by Taufiq • 0

13 results • Page 1 of 1

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Comment: DiffBind; Error: No sites have activity greater than filter value by etiennedanis • 0

Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…

Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0

`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/

Comment: error in ChAMP loading file by janwilseo • 0

Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)

Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k

Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…

Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0

One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…

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Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

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Popular Question to Dario Strbenac ★ 1.6k