Bioconductor Rnaseqrdata

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microRNA gene RNASeqRData edgeR geneontology

3.1 years ago faiza • 0

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find RNASeqRData

updated 3.1 years ago by ATpoint ★ 5.0k • written 3.1 years ago by yuhang • 0

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RNASeqRData TPM

updated 3.2 years ago by ATpoint ★ 5.0k • written 3.2 years ago by prashali.bansal ▴ 10

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RNASeq RNASeqData RNASeqRData

3.2 years ago marymshahi2021 • 0

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974

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RNAseqRData DeSeq2

updated 3.7 years ago by Michael Love 43k • written 3.7 years ago by Hannah • 0

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RNASeqRData

updated 3.7 years ago by Michael Love 43k • written 3.8 years ago by beslinail • 0

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RNASeqRData edgeR RNASeqR RNASeqData

updated 3.8 years ago by Gordon Smyth 53k • written 3.8 years ago by vikycairoli • 0

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RNASeqRData combat_Seq BatchEffect

4.2 years ago • updated 3.9 years ago zeegzaag • 0

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RNASeqRData limma RNASeq RNASeqR

updated 4.7 years ago by Gordon Smyth 53k • written 4.7 years ago by Rita • 0

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RNASeqRData GO

4.8 years ago Wuschel ▴ 10

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RNAinteract rnaseqGene RNASeqRData rnaseqcomp

4.8 years ago Bogdan ▴ 670

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Deseq2 RNASeqRData unbalancedsamplesize

updated 3.5 years ago by Michael Love 43k • written 4.8 years ago by Cihat • 0

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RiboProfiling DESeq2 Bioconductor RNASeqRData

updated 3.1 years ago by Kevin Blighe ★ 4.0k • written 4.8 years ago by Taufiq • 0

13 results • Page 1 of 1

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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to James W. MacDonald 68k