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rnaseqrdata
•
reset
1
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4
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1.1k
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RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA
gene
RNASeqRData
edgeR
geneontology
2.1 years ago
faiza
• 0
1
vote
3
replies
853
views
What should I do with RNA-Seq data to get a gene that work?
find
RNASeqRData
updated 2.1 years ago by
ATpoint
★ 4.5k • written 2.1 years ago by
yuhang
• 0
1
vote
4
replies
1.9k
views
merge TPM values for same geneID
RNASeqRData
TPM
updated 2.2 years ago by
ATpoint
★ 4.5k • written 2.2 years ago by
prashali.bansal
▴ 10
0
votes
0
replies
593
views
how to create PHENO_DATA
RNASeq
RNASeqData
RNASeqRData
2.2 years ago
marymshahi2021
• 0
0
votes
1
reply
751
views
DeSeq2 timecourse analysis
RNAseqRData
DeSeq2
updated 2.7 years ago by
Michael Love
43k • written 2.7 years ago by
Hannah
• 0
0
votes
17
replies
3.9k
views
results(dds) error: couldn't find results. you should first run DESeq()
RNASeqRData
updated 2.7 years ago by
Michael Love
43k • written 2.7 years ago by
beslinail
• 0
1
vote
1
reply
972
views
edgeR for SDE analysis
RNASeqRData
edgeR
RNASeqR
RNASeqData
updated 2.7 years ago by
Gordon Smyth
51k • written 2.8 years ago by
vikycairoli
• 0
1
vote
2
replies
1.1k
views
Is 100K genes too many to run ComBat_seq on?
RNASeqRData
combat_Seq
BatchEffect
3.2 years ago • updated 2.9 years ago
zeegzaag
• 0
0
votes
1
reply
1.0k
views
Limma Voom Design and Contrast Matrix- Can my parameter also be a factor?
RNASeqRData
limma
RNASeq
RNASeqR
updated 3.6 years ago by
Gordon Smyth
51k • written 3.6 years ago by
Rita
• 0
2
votes
2
replies
3.1k
views
How to download KEGG pathways for list of enriched genes
RNASeqRData
GO
3.7 years ago
Wuschel
▴ 10
0
votes
0
replies
902
views
display .CT files in a BioC package
RNAinteract
rnaseqGene
RNASeqRData
rnaseqcomp
3.8 years ago
Bogdan
▴ 670
4
votes
4
replies
1.3k
views
DEseq2: working with unbalanced number of sample in tumor study?
Deseq2
RNASeqRData
unbalancedsamplesize
updated 2.5 years ago by
Michael Love
43k • written 3.8 years ago by
Cihat
• 0
1
vote
5
replies
2.4k
views
How can I use bioconductor and Deseq2 in linux ubuntu 18
RiboProfiling
DESeq2
Bioconductor
RNASeqRData
updated 2.1 years ago by
Kevin Blighe
★ 4.0k • written 3.8 years ago by
Taufiq
• 0
13 results • Page
1 of 1
Recent ...
Replies
Answer: Deseq2 res Function
by
Michael Love
43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data
by
Gordon Smyth
51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Votes
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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