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rnaseqrdata
•
reset
1
vote
4
replies
1.6k
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RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA
gene
RNASeqRData
edgeR
geneontology
3.2 years ago
faiza
• 0
1
vote
3
replies
1.2k
views
What should I do with RNA-Seq data to get a gene that work?
find
RNASeqRData
updated 3.2 years ago by
ATpoint
★ 5.0k • written 3.2 years ago by
yuhang
• 0
1
vote
4
replies
2.6k
views
merge TPM values for same geneID
RNASeqRData
TPM
updated 3.3 years ago by
ATpoint
★ 5.0k • written 3.3 years ago by
prashali.bansal
▴ 10
0
votes
0
replies
768
views
how to create PHENO_DATA
RNASeq
RNASeqData
RNASeqRData
3.3 years ago
marymshahi2021
• 0
0
votes
1
reply
992
views
DeSeq2 timecourse analysis
RNAseqRData
DeSeq2
updated 3.8 years ago by
Michael Love
43k • written 3.8 years ago by
Hannah
• 0
0
votes
17
replies
4.9k
views
results(dds) error: couldn't find results. you should first run DESeq()
RNASeqRData
updated 3.8 years ago by
Michael Love
43k • written 3.8 years ago by
beslinail
• 0
1
vote
1
reply
1.2k
views
edgeR for SDE analysis
RNASeqRData
edgeR
RNASeqR
RNASeqData
updated 3.9 years ago by
Gordon Smyth
53k • written 3.9 years ago by
vikycairoli
• 0
1
vote
2
replies
1.4k
views
Is 100K genes too many to run ComBat_seq on?
RNASeqRData
combat_Seq
BatchEffect
4.3 years ago • updated 4.0 years ago
zeegzaag
• 0
0
votes
1
reply
1.3k
views
Limma Voom Design and Contrast Matrix- Can my parameter also be a factor?
RNASeqRData
limma
RNASeq
RNASeqR
updated 4.8 years ago by
Gordon Smyth
53k • written 4.8 years ago by
Rita
• 0
2
votes
2
replies
3.9k
views
How to download KEGG pathways for list of enriched genes
RNASeqRData
GO
4.9 years ago
Wuschel
▴ 10
0
votes
0
replies
1.2k
views
display .CT files in a BioC package
RNAinteract
rnaseqGene
RNASeqRData
rnaseqcomp
4.9 years ago
Bogdan
▴ 670
4
votes
4
replies
1.7k
views
DEseq2: working with unbalanced number of sample in tumor study?
Deseq2
RNASeqRData
unbalancedsamplesize
updated 3.6 years ago by
Michael Love
43k • written 4.9 years ago by
Cihat
• 0
1
vote
5
replies
2.9k
views
How can I use bioconductor and Deseq2 in linux ubuntu 18
RiboProfiling
DESeq2
Bioconductor
RNASeqRData
updated 3.2 years ago by
Kevin Blighe
★ 4.0k • written 4.9 years ago by
Taufiq
• 0
13 results • Page
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Comment: Opportunity to host EuroBioC2026 Preconference workshops!
by
TikTsokaas33ocissalpc
• 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures
by
ferran.llobet.cabau
▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub?
by
Guido Hooiveld
★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
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Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
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