8 months ago
Gordon Smyth
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941
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1
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4
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4.3k
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9
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10
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6.8k
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1
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5
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1.5k
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updated 4.9 years ago by
rosehahn8583
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written 4.9 years ago by
dario.beraldi
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3
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3.2k
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2
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1
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1.3k
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1
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1
reply
990
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updated 6.0 years ago by
Michael Love
41k
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written 6.0 years ago by
harry.horsnell.17
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0
32
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16
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18k
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updated 6.0 years ago by
luxeredias
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20
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written 7.8 years ago by
tangming2005
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190
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1.2k
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updated 6.2 years ago by
Lukas Chavez
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570
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written 6.2 years ago by
enrique.yeh
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10
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14
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7.6k
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3
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2
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1.6k
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7.6 years ago • updated 7.5 years ago
wcstcyx
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30
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2
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5.2k
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4
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10
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5.2k
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4
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2.4k
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updated 9.1 years ago by
Martin Morgan
25k
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written 9.1 years ago by
thibault.lorin
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10
7
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4
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2.5k
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updated 9.1 years ago by
Gordon Smyth
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written 9.1 years ago by
thibault.lorin
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10
3
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3
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6.8k
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0
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5
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2.6k
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updated 9.2 years ago by
Nicolas Delhomme
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320
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written 9.2 years ago by
Sylvain Foisy
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80
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4
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20k
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updated 13 months ago by
Gordon Smyth
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written 9.3 years ago by
Makis Motakis
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30
3
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2
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16k
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updated 12 months ago by
Gordon Smyth
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written 10.0 years ago by
shirley zhang
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1.0k
2
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1
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1.6k
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updated 9.5 years ago by
James W. MacDonald
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written 9.5 years ago by
gustavoborin01
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
•
0
Thank for your response. It is Illumina 450 K. I use this code
```{r }
library(IlluminaHumanMethylation450kanno.ilmn12.hg19)
annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★
5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed):
```
limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
•
0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★
4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
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