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Replies
Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
by
ATpoint
★
4.6k
I think you run into the common pitfall that you treat results as categorical (significant, not significant) whereas in reality the results…
Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
by
swbarnes2
★
1.4k
It would probably help if you broke out the raw and normalized read counts for all the samples.
Comment: RSubread output significantly different from bash Subread output
by
Aimee
•
0
Hi Gordon,
Thank you so much for this response. I went back and checked, and you are absolutely correct that it was shown in the settings b…
Answer: Can we get beta values with DMRcate package
by
James W. MacDonald
67k
If you get an error that says
```
Error in getCollapsedBetas(myAnnotation) :
could not find function "getCollapsedBetas"
```
It …
Comment: What type of counts data to import for performing Isoform analysis in edgeR
by
ATpoint
★
4.6k
I think this already happened, see https://github.com/nf-core/rnasplice/issues/162
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