Showing : ruv • reset
1
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2
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1.3k
views
RUV4 for microarrays
RUV4 RUV Microarray
3.0 years ago Antonio • 0
5
votes
6
replies
1.6k
views
RUVseq to remove a library size artefact in a zebrafish brain RNA-seq dataset
RUVSeq RUV RNA-seq
updated 3.6 years ago by 65k • written 3.6 years ago by ▴ 20
0
votes
1
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1.6k
views
Application of RUV to a small Nanostring dataset
RUV Nanostring RUV-III
updated 4.0 years ago by ▴ 20 • written 4.7 years ago by ▴ 20
0
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3
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952
views
Highly variable gene analysis including RUVs batch correction
deseq2 RUV batch highly variable genes
updated 4.2 years ago by • 0 • written 4.2 years ago by • 0
0
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1
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1.2k
views
Using RUVs on Deseq2 but clustering still seems wrong
deseq2 ruv batch
updated 4.6 years ago by 41k • written 4.6 years ago by • 0
0
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0
replies
898
views
missMethyl EPIC manifest update
missmethyl epic illuminahumanmethylationepicanno.ilm10b4.hg19. ruv
5.7 years ago peter.fransquet • 0
0
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0
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886
views
which value from ruvadj in missMethyl can present methylation status
methylation missmethyl RUV batch effect
6.0 years ago RC • 0
0
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0
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905
views
MissMethyl: Sample size and control probes
missmethyl RUV control probes
6.0 years ago Taub, Margaret ▴ 10
2
votes
9
replies
2.5k
views
Zero inflation in RUV normalization and DE for single cell data
ruv ruvseq ruvnormalize single-cell zero-inflated
updated 6.7 years ago by ▴ 950 • written 6.7 years ago by ▴ 80
1
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3
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2.2k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV ruvseq ruvr ruvnormalize single cell
6.7 years ago Nik Tuzov ▴ 80
0
votes
0
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908
views
Differential expressed genes between different samples in RUVseq
rnaseq ruv differential gene expression R
6.8 years ago manish20072013 • 0
3
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4
replies
3.1k
views
Single cells batch effects
RUV single cell batch effect
7.1 years ago ribioinfo ▴ 100
0
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0
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987
views
Has anyone used the RUV package for Microbiome data?
ruv
7.2 years ago sasha • 0
0
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1
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2.3k
views
Can FPKM or TPM values be used as RUVs input ?
ruvseq ruvg ruv
updated 7.2 years ago by ▴ 950 • written 7.3 years ago by • 0
0
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0
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1.1k
views
Bach effect and PEER/RUV correction on large population
methylation gene expression sva batch effect ruv
7.4 years ago carleshf ▴ 10
2
votes
1
reply
1.5k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq RUV ruvnormalize ruvg
7.8 years ago anthonycolombo60 • 0
0
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5
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2.2k
views
RUVseq for microRNAs
ruvseq ruv microrna
8.8 years ago • updated 8.7 years ago sergio.espeso-gil • 0
0
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1
reply
1.6k
views
normalised data after RUV2( )
ruv microarray
updated 8.8 years ago by ▴ 30 • written 8.9 years ago by ▴ 150
3
votes
2
replies
2.6k
views
Normalisation before RUVg and RUV2?
ruvseq ruv
updated 9.0 years ago by ▴ 950 • written 9.0 years ago by ▴ 150
1
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9
replies
2.6k
views
RUV: removing unwanted variation in RNA-seq
RUV ruvseq rnaseq
9.0 years ago sergio.espeso-gil • 0
20 results • Page 1 of 1
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Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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