updated 3.6 years ago by
James W. MacDonald
65k
•
written 3.6 years ago by
karissa.barthelson
▴
20
5
votes
6
replies
1.6k
views
3
votes
4
replies
3.1k
views
7.1 years ago
ribioinfo
▴
100
3
votes
2
replies
2.6k
views
updated 9.0 years ago by
davide risso
▴
950
•
written 9.0 years ago by
Pauly Lin
▴
150
2
votes
9
replies
2.5k
views
updated 6.7 years ago by
davide risso
▴
950
•
written 6.7 years ago by
Nik Tuzov
▴
80
2
votes
1
reply
1.5k
views
1
vote
2
replies
1.3k
views
3.0 years ago
Antonio
•
0
1
vote
3
replies
2.2k
views
1
vote
9
replies
2.6k
views
9.0 years ago
sergio.espeso-gil
•
0
0
votes
0
replies
1.1k
views
0
votes
0
replies
908
views
0
votes
1
reply
1.6k
views
0
votes
5
replies
2.2k
views
8.8 years ago • updated 8.7 years ago
sergio.espeso-gil
•
0
0
votes
0
replies
907
views
6.0 years ago
Taub, Margaret
▴
10
0
votes
0
replies
888
views
0
votes
0
replies
900
views
0
votes
1
reply
1.6k
views
0
votes
1
reply
1.2k
views
updated 4.6 years ago by
Michael Love
41k
•
written 4.6 years ago by
r.tom
•
0
0
votes
3
replies
952
views
0
votes
1
reply
2.3k
views
updated 7.2 years ago by
davide risso
▴
950
•
written 7.3 years ago by
weiwsmiling
•
0
0
votes
0
replies
987
views
Recent ...
Replies
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴
10
Hi Michael,
Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★
4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴
10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★
4.0k
I do not know this decontamination tool you use but generally:
If these counts are basically "corrected" raw counts in the sense that they'…
Votes
Awards
• All
Locations
• All
United States, 1 minute ago
United States, 3 minutes ago
France, 13 minutes ago
United States, 16 minutes ago
United States, 45 minutes ago
United States, 1 minute ago
United States, 3 minutes ago
France, 13 minutes ago
United States, 16 minutes ago
United States, 45 minutes ago
Traffic: 1059 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6