Bioconductor S4

Showing : s4 • reset

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2.6k

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lumi S4

9.2 years ago Chi Hong • 0

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730

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S4 deseq2

updated 5.3 years ago by swbarnes2 ★ 1.3k • written 5.3 years ago by shintzen • 0

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1.7k

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rnbeads error as.vector(data) s4vectors s4

8.7 years ago schasse • 0

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11k

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genomicranges grangeslist granges s4

updated 2.1 years ago by Hervé Pagès 16k • written 7.9 years ago by richierocks ▴ 40

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1.2k

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s4 coercion iranges integerlist

7.7 years ago jian_liangli • 0

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1.1k

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iranges integerlist s4

7.7 years ago Jurat Shahidin ▴ 80

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992

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S4 packages

updated 5.7 years ago by Michael Lawrence ★ 11k • written 5.7 years ago by lukaszbednarz ▴ 10

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1.0k

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s4 methods SummarizedExperiment

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by brendan.innes ▴ 20

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1.0k

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DBI S4 Biobase

updated 20 months ago by Hervé Pagès 16k • written 20 months ago by sandmann.t ▴ 70

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5.2k

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updated 9.1 years ago by Michael Lawrence ★ 11k • written 9.1 years ago by Koen Van den Berge ▴ 180

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794

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calcium imaging imaging s4

updated 4.1 years ago by shepherl 3.9k • written 4.1 years ago by muad.abdelhay ▴ 10

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841

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S4 Rcpp InteractionSet IRanges Rle

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by lklei001 • 0

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987

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s4 generic

updated 5.2 years ago by Marcel Ramos 690 • written 5.2 years ago by Michael Steinbaugh ▴ 90

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1.0k

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s4 dataframe left_join merge

updated 5.0 years ago by Hervé Pagès 16k • written 5.0 years ago by Michael Steinbaugh ▴ 90

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654

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class S4

updated 4.2 years ago by Hervé Pagès 16k • written 4.2 years ago by Teun van den Brand • 0

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1.1k

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devtools S4 methods cache

5.4 years ago Michael Steinbaugh ▴ 90

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1.3k

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mclust s4vectors S4 as.matrix .FCS

7.8 years ago anara92 • 0

17 results • Page 1 of 1

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Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

In that case both time and treatment are identical things, so choose one and go with it.

Votes

Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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