Bioconductor S4

Showing : s4 • reset

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1.0k

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DBI S4 Biobase

updated 20 months ago by Hervé Pagès 16k • written 20 months ago by sandmann.t ▴ 70

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845

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S4 Rcpp InteractionSet IRanges Rle

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by lklei001 • 0

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795

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calcium imaging imaging s4

updated 4.1 years ago by shepherl 3.9k • written 4.1 years ago by muad.abdelhay ▴ 10

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654

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class S4

updated 4.2 years ago by Hervé Pagès 16k • written 4.2 years ago by Teun van den Brand • 0

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1.0k

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s4 dataframe left_join merge

updated 5.0 years ago by Hervé Pagès 16k • written 5.0 years ago by Michael Steinbaugh ▴ 90

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990

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s4 generic

updated 5.2 years ago by Marcel Ramos 690 • written 5.2 years ago by Michael Steinbaugh ▴ 90

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731

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S4 deseq2

updated 5.3 years ago by swbarnes2 ★ 1.3k • written 5.3 years ago by shintzen • 0

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1.0k

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s4 methods SummarizedExperiment

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by brendan.innes ▴ 20

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1.1k

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devtools S4 methods cache

5.4 years ago Michael Steinbaugh ▴ 90

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994

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S4 packages

updated 5.7 years ago by Michael Lawrence ★ 11k • written 5.7 years ago by lukaszbednarz ▴ 10

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1.1k

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iranges integerlist s4

7.7 years ago Jurat Shahidin ▴ 80

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1.2k

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s4 coercion iranges integerlist

7.7 years ago jian_liangli • 0

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1.3k

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mclust s4vectors S4 as.matrix .FCS

7.9 years ago anara92 • 0

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11k

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genomicranges grangeslist granges s4

updated 2.1 years ago by Hervé Pagès 16k • written 7.9 years ago by richierocks ▴ 40

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1.7k

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rnbeads error as.vector(data) s4vectors s4

8.7 years ago schasse • 0

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5.2k

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updated 9.1 years ago by Michael Lawrence ★ 11k • written 9.1 years ago by Koen Van den Berge ▴ 180

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2.6k

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lumi S4

9.2 years ago Chi Hong • 0

17 results • Page 1 of 1

Recent ...

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Comment: Couldn't connect to server while using "pathways" by ATpoint ★ 4.1k

Please understand that we neither can see your screen, nor read minds. You at least need to provide the line of code and the name of the pa…

Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k

> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of unavailability.…

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

Awards • All

Scholar to ATpoint ★ 4.1k