Bioconductor S4

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genomicranges grangeslist granges s4

updated 2.1 years ago by Hervé Pagès 16k • written 7.9 years ago by richierocks ▴ 40

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updated 9.0 years ago by Michael Lawrence ★ 11k • written 9.1 years ago by Koen Van den Berge ▴ 180

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lumi S4

9.2 years ago Chi Hong • 0

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rnbeads error as.vector(data) s4vectors s4

8.7 years ago schasse • 0

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mclust s4vectors S4 as.matrix .FCS

7.8 years ago anara92 • 0

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s4 coercion iranges integerlist

7.7 years ago jian_liangli • 0

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iranges integerlist s4

7.7 years ago Jurat Shahidin ▴ 80

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devtools S4 methods cache

5.4 years ago Michael Steinbaugh ▴ 90

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s4 methods SummarizedExperiment

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by brendan.innes ▴ 20

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s4 dataframe left_join merge

updated 5.0 years ago by Hervé Pagès 16k • written 5.0 years ago by Michael Steinbaugh ▴ 90

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DBI S4 Biobase

updated 20 months ago by Hervé Pagès 16k • written 20 months ago by sandmann.t ▴ 70

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S4 packages

updated 5.7 years ago by Michael Lawrence ★ 11k • written 5.7 years ago by lukaszbednarz ▴ 10

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984

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s4 generic

updated 5.2 years ago by Marcel Ramos 690 • written 5.2 years ago by Michael Steinbaugh ▴ 90

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838

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S4 Rcpp InteractionSet IRanges Rle

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by lklei001 • 0

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calcium imaging imaging s4

updated 4.1 years ago by shepherl 3.8k • written 4.1 years ago by muad.abdelhay ▴ 10

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728

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S4 deseq2

updated 5.2 years ago by swbarnes2 ★ 1.3k • written 5.2 years ago by shintzen • 0

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651

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class S4

updated 4.2 years ago by Hervé Pagès 16k • written 4.2 years ago by Teun van den Brand • 0

17 results • Page 1 of 1

Recent ...

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Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Michael Love 41k

Sorry, for questions about statistical analysis plan and interpretation of results, I recommend to work with a local statistician or someon…

Answer: Fold change calculation in Diffbind vs. DESEQ2? by Michael Love 41k

There was a recent DiffBind question on the support site that noticed the same thing, try searching recent DiffBind posts.

Answer: Timecourse RNASeq analysis by Michael Love 41k

There are many choices for time course, and we have an example in our workflow (rnaseqGene). Otherwise, I recommend to consult a local …

Answer: Padj "NA" with thousands of low count although the raw read counts are quite lar by Michael Love 41k

You can either turn off independent filtering in `results` or use `ihw` see the vignette.

Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Thanks Gordon for a detail guide! You have a great memory of time. GSVA also do differential express at pathway level (https://bioconductor…

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Comment: Why p value inconsistent when using different number of pathway score?

Nominations for Bioconductor Awards 2024!

Answer: Improving the design matrices vignette in RNAseq123

Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha

Awards • All

Centurion to Chris • 0

Commentator to Leonard Goldstein ▴ 200

Popular Question to Matthew Ritchie ▴ 1000

Scholar to alserg ▴ 260