Showing : simpleaffy • reset
5
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3.4k
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Although I successfully installed the package "simpleaffy'' , I cannot library it. Why?
simpleaffy
updated 9 months ago by 67k • written 3.0 years ago by • 0
0
votes
1
reply
918
views
Error using simpleaffy
software error simpleaffy genefilter
updated 5.4 years ago by 67k • written 5.4 years ago by • 0
4
votes
3
replies
1.4k
views
GCRMA not working inside tryCatch block in R
gcrma simpleaffy error handling trycatch
updated 6.3 years ago by 67k • written 6.3 years ago by • 0
2
votes
8
replies
4.7k
views
Clariom D Human Microarray CDF file to package
simpleaffy makecdfenv
8.4 years ago jayme.rickman • 0
0
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0
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1.5k
views
Export expressionSet to ArrayExpress "processed data"
expressionset simpleaffy arrayexpress tsv
8.5 years ago Steffen Neumann ▴ 30
0
votes
1
reply
1.1k
views
simpleaffy issue with empty PairComp calls slot
simpleaffy microarray r
updated 9.5 years ago by 67k • written 9.5 years ago by • 0
1
vote
3
replies
2.1k
views
QC probes in HTA2-0
affy qc simpleaffy HTA
updated 9.9 years ago by 67k • written 9.9 years ago by ▴ 40
1
vote
3
replies
2.0k
views
QC for Affymetrix miRNA 4.0 arrays: Error from qc/QCReport
simpleaffy affy affyQCReport
10.0 years ago federico.comoglio ▴ 100
0
votes
3
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1.5k
views
Is a subset of my arrays from degraded RNA?
Microarray GO Clustering affy affyPLM simpleaffy Microarray GO Clustering affy affyPLM
10.5 years ago Peter Davidsen ▴ 210
0
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0
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1.8k
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QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
11.3 years ago b a ▴ 40
0
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0
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1.2k
views
QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
11.3 years ago b a ▴ 40
0
votes
3
replies
7.9k
views
Error: cannot allocate vector of size
gcrma simpleaffy gcrma simpleaffy
updated 11.5 years ago by 67k • written 11.5 years ago by ▴ 50
0
votes
3
replies
1.3k
views
simple
GO simpleaffy GO simpleaffy
updated 11.6 years ago by 67k • written 11.6 years ago by ★ 13k
0
votes
1
reply
1.2k
views
Problem when loading simpleaffy package
simpleaffy simpleaffy
updated 11.7 years ago by 25k • written 11.7 years ago by ▴ 40
0
votes
2
replies
1.5k
views
results.summary function returns error
Microarray Annotation hgu133a simpleaffy Microarray Annotation hgu133a simpleaffy
updated 12.2 years ago by 67k • written 12.2 years ago by ★ 13k
0
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0
replies
1.2k
views
Issue with Genome Graphs
Annotation simpleaffy oligo GenomeGraphs frma Annotation simpleaffy oligo GenomeGraphs
12.2 years ago Jeremy Ng ▴ 180
0
votes
0
replies
1.2k
views
Simpleaffy error : No methods found in "Biobase" for requests: geneNames
simpleaffy simpleaffy
12.3 years ago Matthew Thornton ▴ 380
0
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0
replies
1.4k
views
library(simpleaffy) error
simpleaffy simpleaffy
12.3 years ago Matthew Thornton ▴ 380
0
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1
reply
2.2k
views
simpleaffy() not recognizing cdf file
cdf simpleaffy cdf simpleaffy
updated 12.4 years ago by 67k • written 12.4 years ago by ★ 13k
0
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0
replies
1.3k
views
Odd warning in simpleaffy, using quality control
cdf simpleaffy cdf simpleaffy
12.8 years ago ejulia ▴ 10
0
votes
1
reply
2.7k
views
Mas5 log transformed data
Microarray Normalization simpleaffy Microarray Normalization simpleaffy
updated 12.8 years ago by 67k • written 12.8 years ago by ★ 13k
0
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2
replies
2.0k
views
Odd warning in simpleaffy, using quality control
cdf probe simpleaffy ArrayExpress cdf probe simpleaffy ArrayExpress
updated 12.9 years ago by ▴ 280 • written 12.9 years ago by ▴ 740
0
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0
replies
1.4k
views
Odd warning in simpleaffy, using quality control
cdf simpleaffy ArrayExpress cdf simpleaffy ArrayExpress
12.9 years ago David Westergaard ▴ 280
0
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1
reply
1.2k
views
[simpleaffy] maizecdf.qcdef
simpleaffy simpleaffy
13.4 years ago boczniak767 ▴ 740
0
votes
4
replies
1.9k
views
Microarray query
simpleaffy simpleaffy
updated 13.8 years ago by ▴ 580 • written 13.8 years ago by ▴ 40
0
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1
reply
1.2k
views
(no subject)
simpleaffy simpleaffy
updated 13.8 years ago by ★ 13k • written 13.8 years ago by ▴ 40
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0
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1.3k
views
quality control of affy Chips for miRNA
miRNA cdf probe affy simpleaffy affyQCReport affycoretools arrayQualityMetrics miRNA cdf
13.9 years ago Assa Yeroslaviz ★ 1.5k
0
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1
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1.2k
views
quality control of affy Chips for miRNA
miRNA cdf affy simpleaffy affyQCReport affycoretools miRNA cdf affy simpleaffy
updated 13.9 years ago by 67k • written 13.9 years ago by ★ 1.5k
0
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3
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1.2k
views
Quality Control of Exon arrays using xps?
simpleaffy simpleaffy
updated 14.1 years ago by ★ 3.9k • written 14.1 years ago by ▴ 170
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0
replies
1.3k
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drosophila2cdf in simpleaffy / affyQCReport
cdf simpleaffy affyQCReport cdf simpleaffy affyQCReport
14.2 years ago Assa Yeroslaviz ★ 1.5k
0
votes
2
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1.6k
views
one problem about IRanges Package
simpleaffy IRanges simpleaffy IRanges
updated 14.2 years ago by 6.7k • written 14.2 years ago by ▴ 50
0
votes
0
replies
957
views
Simpleaffy problems
Annotation probe affy matchprobes simpleaffy AnnotationDbi Annotation probe affy
14.3 years ago James W. MacDonald 67k
0
votes
1
reply
915
views
problem in installing simpleaffy packeges
simpleaffy simpleaffy
updated 14.7 years ago by 25k • written 14.7 years ago by ▴ 20
0
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0
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1.1k
views
question regarding qc function in simpleaffy package
cdf affy simpleaffy cdf affy simpleaffy
14.8 years ago Groot, Philip de ▴ 630
0
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0
replies
1.9k
views
Error in getCdfInfo(object)
cdf simpleaffy cdf simpleaffy
14.8 years ago Arun A K ▴ 20
0
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0
replies
1.1k
views
question regarding qc function in simpleaffy package
cdf affy simpleaffy cdf affy simpleaffy
14.8 years ago James Anderson ▴ 820
0
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0
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889
views
question about QC and Simpleaffy package
simpleaffy simpleaffy
15.0 years ago James Anderson ▴ 820
0
votes
5
replies
1.9k
views
simpleAffy QC on HT_HG-U133_Plus_PM
cdf affy simpleaffy cdf affy simpleaffy
15.2 years ago Michael Walter ▴ 160
0
votes
1
reply
1.5k
views
Group samples on heatmap?
simpleaffy simpleaffy
updated 15.5 years ago by 67k • written 15.5 years ago by ▴ 220
0
votes
3
replies
1.4k
views
qc in simpleaffy
GO simpleaffy GO simpleaffy
15.8 years ago Mayte Suarez-Farinas ▴ 510
0
votes
1
reply
1.6k
views
SimpeAffy: how to get/generate qcdef file?
cdf probe affy simpleaffy cdf probe affy simpleaffy
updated 16.0 years ago by ▴ 30 • written 16.0 years ago by ▴ 170
0
votes
0
replies
951
views
SimpeAffy: how to get/generate qcdef file?
cdf simpleaffy cdf simpleaffy
16.0 years ago Renaud Gaujoux ▴ 170
0
votes
2
replies
1.5k
views
Problem with Annotation of Mouse4302.db in simpleaffy
Annotation mouse4302 simpleaffy GLAD Annotation mouse4302 simpleaffy GLAD
updated 16.0 years ago by 67k • written 16.0 years ago by ▴ 40
0
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0
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1.2k
views
simpleaffy with hgu133plus2
hgu133plus2 simpleaffy hgu133plus2 simpleaffy
16.1 years ago dorothyc ▴ 140
0
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2
replies
1.3k
views
Simpleaffy: how are 3/5 ratios calculated
graph simpleaffy PROcess graph simpleaffy PROcess
updated 16.3 years ago by ▴ 320 • written 16.4 years ago by ▴ 50
0
votes
1
reply
937
views
Background values
Microarray gcrma simpleaffy Microarray gcrma simpleaffy
updated 16.4 years ago by ★ 13k • written 16.4 years ago by ▴ 160
0
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1
reply
1.3k
views
library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer cdf affy simpleaffy affyQCReport affyio arrayQualityMetrics Cancer cdf affy
updated 16.5 years ago by ★ 5.5k • written 16.5 years ago by ▴ 200
0
votes
0
replies
977
views
simpleaffy pairwise.comparison problem
simpleaffy simpleaffy
16.5 years ago David Ruau ▴ 190
0
votes
12
replies
2.4k
views
Building BioC 2.2 with R 2.7.0
GO annaffy simpleaffy GO annaffy simpleaffy
updated 16.7 years ago by ▴ 630 • written 16.7 years ago by ▴ 160
0
votes
1
reply
969
views
simpleAffy with bovine cdf
cdf simpleaffy cdf simpleaffy
16.8 years ago Paul Geeleher ★ 1.3k
50 results • Page 1 of 1
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Answer: Selection of correct coefficients or contrasts in DESeq2 by swbarnes2 ★ 1.4k
I think you need to include the design you used, and the command you used to call it. The simplest answer is that your two ways of doing t…
Comment: Csaw normalization strategies - general inquiry by Luca • 0
Hello Aaron, About the IP efficiencies, yes definitely and for us, to complicate this experiment further, these batches were generated by …
Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by Quang NN ▴ 10
Thank you ATpoint for your response. In bulkRNAseq, I did have two cell types to compare. But, I want to also see if bulkRNAseq might have …
Answer: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k
The choice of variable genes is typically part of a QC process. You select genes that in an unbiased fashion (unbiased because variance cal…
Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by ATpoint ★ 4.6k
My take is that RNA-seq (be it bulk or single-cell) is inherently relative. I don't think you can really "compare" the absolute expression …
Votes
Answer: Csaw normalization strategies - general inquiry
A: DESeq2 interaction term
Comment: Recount3 data correspond to TCGA data
Answer: DESeq2- merging technical vs biological replicates
Answer: SingleCellExperiment convenience function for metadata+expression?
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