Showing : simpleaffy • reset
0
votes
12
replies
2.0k
views
Building BioC 2.2 with R 2.7.0
GO annaffy simpleaffy GO annaffy simpleaffy
updated 15.9 years ago by ▴ 630 • written 15.9 years ago by ▴ 160
0
votes
9
replies
1.8k
views
problem with function rma
Normalization rat2302 cdf genefilter affy simpleaffy affyQCReport affyio Normalization
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 80
0
votes
9
replies
1.8k
views
problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 16.9 years ago by ★ 7.4k • written 17.0 years ago by ★ 2.2k
2
votes
8
replies
4.1k
views
Clariom D Human Microarray CDF file to package
simpleaffy makecdfenv
7.6 years ago jayme.rickman • 0
0
votes
7
replies
2.0k
views
simpleaffy error
simpleaffy simpleaffy
19.8 years ago kfbargad@lg.ehu.es ▴ 260
0
votes
6
replies
1.9k
views
ReadAffy Error: new versions causing problems?
genefilter gcrma matchprobes simpleaffy affyio genefilter gcrma matchprobes simpleaffy
updated 16.9 years ago by ▴ 20 • written 16.9 years ago by ▴ 200
0
votes
6
replies
1.3k
views
problems using simpleaffy
probe simpleaffy probe simpleaffy
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 510
0
votes
5
replies
1.9k
views
affyPLM - cant plot chip pseudo image
cdf genefilter affy affydata affyPLM simpleaffy affyio cdf genefilter affy affydata
updated 16.8 years ago by 65k • written 16.8 years ago by ▴ 50
0
votes
5
replies
1.6k
views
simpleAffy QC on HT_HG-U133_Plus_PM
cdf affy simpleaffy cdf affy simpleaffy
14.4 years ago Michael Walter ▴ 160
5
votes
4
replies
2.7k
views
Although I successfully installed the package "simpleaffy'' , I cannot library it. Why?
simpleaffy
2.3 years ago yanchangjian2019 • 0
0
votes
4
replies
1.3k
views
error with results.summary in simpleaffy
Annotation Cancer hgu133a probe simpleaffy Annotation Cancer hgu133a probe simpleaffy
updated 18.8 years ago by ▴ 160 • written 18.8 years ago by ★ 1.1k
0
votes
4
replies
1.7k
views
Microarray query
simpleaffy simpleaffy
updated 13.0 years ago by ▴ 580 • written 13.0 years ago by ▴ 40
0
votes
4
replies
1.3k
views
problems rma() with mouse exon affy data in exonmap package
Survival cdf genefilter affy simpleaffy plier exonmap Survival cdf genefilter affy
updated 16.7 years ago by 65k • written 16.7 years ago by ▴ 20
0
votes
4
replies
1.1k
views
problem with loading affyQCReport
simpleaffy affyQCReport simpleaffy affyQCReport
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ▴ 10
0
votes
4
replies
1.3k
views
error with AffyQCReport
cdf annotate affy limma RBGL simpleaffy GOstats affyQCReport cdf annotate affy limma
updated 17.2 years ago by ★ 13k • written 17.2 years ago by ▴ 830
0
votes
3
replies
7.6k
views
Error: cannot allocate vector of size
gcrma simpleaffy gcrma simpleaffy
updated 10.8 years ago by 65k • written 10.8 years ago by ▴ 50
0
votes
3
replies
1.3k
views
Recent changes to Bioconductor packages
reposTools graph Rgraphviz simpleaffy impute reposTools graph Rgraphviz simpleaffy impute
20.2 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
3
replies
1.2k
views
qc.stats error with mgu74av2
mgu74av2 probe simpleaffy mgu74av2 probe simpleaffy
updated 20.2 years ago by ★ 1.1k • written 20.2 years ago by ★ 1.4k
0
votes
3
replies
1.0k
views
AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf genefilter affy simpleaffy affyQCReport cdf genefilter affy simpleaffy affyQCReport
updated 17.2 years ago by ★ 1.1k • written 17.2 years ago by ▴ 270
4
votes
3
replies
1.1k
views
GCRMA not working inside tryCatch block in R
gcrma simpleaffy error handling trycatch
updated 5.6 years ago by 65k • written 5.6 years ago by • 0
1
vote
3
replies
1.9k
views
QC probes in HTA2-0
affy qc simpleaffy HTA
updated 9.1 years ago by 65k • written 9.1 years ago by ▴ 40
0
votes
3
replies
1.3k
views
Is a subset of my arrays from degraded RNA?
Microarray GO Clustering affy affyPLM simpleaffy Microarray GO Clustering affy affyPLM
9.8 years ago Peter Davidsen ▴ 210
0
votes
3
replies
1.2k
views
simple
GO simpleaffy GO simpleaffy
updated 10.8 years ago by 65k • written 10.8 years ago by ★ 13k
0
votes
3
replies
1.2k
views
qc in simpleaffy
GO simpleaffy GO simpleaffy
15.0 years ago Mayte Suarez-Farinas ▴ 510
0
votes
3
replies
1.4k
views
package simpleaffy
Genetics affy simpleaffy Genetics affy simpleaffy
updated 20.1 years ago by ★ 3.9k • written 20.1 years ago by ▴ 20
0
votes
3
replies
1.0k
views
Quality Control of Exon arrays using xps?
simpleaffy simpleaffy
updated 13.4 years ago by ★ 3.9k • written 13.4 years ago by ▴ 170
0
votes
3
replies
1.1k
views
Error doing Mas5 calculation with Simpleaffy package
Yeast affy simpleaffy Yeast affy simpleaffy
updated 19.9 years ago by ★ 1.1k • written 20.0 years ago by ▴ 50
0
votes
3
replies
993
views
minimum expression level (Simpleaffy)
Normalization simpleaffy Normalization simpleaffy
updated 16.3 years ago by ▴ 310 • written 16.3 years ago by ▴ 90
0
votes
3
replies
1.1k
views
phenoData
simpleaffy simpleaffy
20.1 years ago Simon Kidd ▴ 180
1
vote
3
replies
1.9k
views
QC for Affymetrix miRNA 4.0 arrays: Error from qc/QCReport
simpleaffy affy affyQCReport
9.2 years ago federico.comoglio ▴ 100
0
votes
2
replies
1.1k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 18.8 years ago by ▴ 780 • written 18.8 years ago by ★ 1.4k
0
votes
2
replies
994
views
SimpleAffy: problem with Yeast Genome 2.0 Array
Yeast cdf simpleaffy Yeast cdf simpleaffy
updated 18.5 years ago by ★ 2.2k • written 18.5 years ago by ▴ 170
0
votes
2
replies
1.2k
views
simpleaffy and yeast2cdf problems
Survival cdf genefilter affy simpleaffy Survival cdf genefilter affy simpleaffy
updated 17.3 years ago by ▴ 160 • written 17.3 years ago by ▴ 50
0
votes
2
replies
1.1k
views
simpleaffy problem
probe simpleaffy probe simpleaffy
updated 19.7 years ago by ★ 1.1k • written 19.7 years ago by ▴ 380
0
votes
2
replies
2.9k
views
Error in function (classes, fdef, mtable)
cdf genefilter reposTools gcrma matchprobes affyPLM simpleaffy affyio cdf genefilter
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 360
0
votes
2
replies
1.8k
views
Odd warning in simpleaffy, using quality control
cdf probe simpleaffy ArrayExpress cdf probe simpleaffy ArrayExpress
updated 12.2 years ago by ▴ 280 • written 12.2 years ago by ▴ 720
0
votes
2
replies
1.3k
views
results.summary function returns error
Microarray Annotation hgu133a simpleaffy Microarray Annotation hgu133a simpleaffy
updated 11.4 years ago by 65k • written 11.4 years ago by ★ 13k
0
votes
2
replies
1.6k
views
problem with hist.default in affystart in package affycoretools
GO cdf annotate affy limma RBGL simpleaffy GOstats Category affyQCReport affyio GO cdf
updated 17.4 years ago by 65k • written 17.4 years ago by ▴ 890
0
votes
2
replies
1.3k
views
Problem with Annotation of Mouse4302.db in simpleaffy
Annotation mouse4302 simpleaffy GLAD Annotation mouse4302 simpleaffy GLAD
updated 15.2 years ago by 65k • written 15.2 years ago by ▴ 40
0
votes
2
replies
1.1k
views
Simpleaffy: how are 3/5 ratios calculated
graph simpleaffy PROcess graph simpleaffy PROcess
updated 15.6 years ago by ▴ 320 • written 15.6 years ago by ▴ 50
0
votes
2
replies
1.5k
views
one problem about IRanges Package
simpleaffy IRanges simpleaffy IRanges
updated 13.5 years ago by 6.7k • written 13.5 years ago by ▴ 50
0
votes
1
reply
1.5k
views
SimpeAffy: how to get/generate qcdef file?
cdf probe affy simpleaffy cdf probe affy simpleaffy
updated 15.2 years ago by ▴ 30 • written 15.2 years ago by ▴ 170
0
votes
1
reply
728
views
RMA warning message about missing se.exprs
Survival Cancer cdf genefilter simpleaffy Survival Cancer cdf genefilter simpleaffy
updated 17.0 years ago by 25k • written 17.0 years ago by ▴ 110
0
votes
1
reply
949
views
QC stats plot
moe430a simpleaffy moe430a simpleaffy
updated 19.4 years ago by ★ 5.5k • written 19.4 years ago by ▴ 110
0
votes
1
reply
875
views
error in ygs98cdf environment?
Microarray simpleaffy Microarray simpleaffy
updated 19.4 years ago by ★ 1.1k • written 19.4 years ago by ▴ 300
0
votes
1
reply
1.4k
views
simpleaffy
simpleaffy simpleaffy
updated 20.1 years ago by ▴ 50 • written 20.1 years ago by ▴ 180
0
votes
1
reply
939
views
simpleaffy plot error
Survival cdf genefilter simpleaffy Survival cdf genefilter simpleaffy
updated 16.9 years ago by ★ 1.1k • written 16.9 years ago by ▴ 510
0
votes
1
reply
1.2k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 18.8 years ago by ★ 1.4k • written 18.8 years ago by ★ 1.1k
0
votes
1
reply
760
views
problems using cdfenv
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
updated 19.6 years ago by 65k • written 19.6 years ago by ▴ 510
0
votes
1
reply
1.2k
views
annaffy errors
GO Survival mgu74av2 cdf annotate affy limma gcrma matchprobes annaffy simpleaffy plier
updated 17.2 years ago by 65k • written 17.2 years ago by ▴ 320
50 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Votes
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Awards • All
Popular Question to James W. MacDonald 65k
Scholar to Michael Love 41k
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Popular Question to Chris • 0
Locations • All
United States, 1 minute ago
United States, 3 minutes ago
France, 13 minutes ago
United States, 16 minutes ago
United States, 45 minutes ago
Traffic: 1048 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6