Bioconductor Splicing

Showing : splicing • reset

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556

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splicing limma edgeR

updated 8 months ago by Gordon Smyth 51k • written 8 months ago by scoops_streams_06 • 0

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683

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transcriptome splicing assembly

updated 2.0 years ago by James W. MacDonald 67k • written 2.0 years ago by Marianna ▴ 20

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1.1k

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splicing Exon featureCounts subread DEXSeq

2.5 years ago NIK • 0

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842

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

4.1 years ago noahhelton98 ▴ 20

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2.8k

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edger normalization differential exon usage splicing

updated 4.1 years ago by Yunshun Chen ▴ 870 • written 4.1 years ago by oakhamwolf • 0

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1.3k

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DEXSeq Splicing Exon Usage

4.8 years ago gunjan.dikshit • 0

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1.3k

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ciri splicing splicesites

updated 4.8 years ago by lhddiallo • 0 • written 6.5 years ago by csijst • 0

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980

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junctionseq splicing RNAseq DEXSeq

5.0 years ago stuart ▴ 10

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1.7k

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genomicalignments splicing coverage

updated 5.1 years ago by Michael Lawrence ★ 11k • written 7.6 years ago by rasi1983 ▴ 10

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1.1k

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dexseq splicing sqtl qtl

updated 5.8 years ago by Alejandro Reyes ★ 1.9k • written 5.8 years ago by rtunney2 • 0

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2.0k

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deseq2 splicing

updated 6.6 years ago by Michael Love 42k • written 6.6 years ago by yannickwurm • 0

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1.7k

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DRIMSeq splicing differential isoform usage

updated 7.8 years ago by Gosia Nowicka ▴ 90 • written 7.8 years ago by kristoffer.vittingseerup ▴ 20

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3.0k

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sgseq splicing alternative splicing

updated 8.7 years ago by Leonard Goldstein ▴ 260 • written 8.7 years ago by vakul.mohanty ▴ 20

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1.9k

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microarray splicing

updated 8.8 years ago by Sonika Tyagi ▴ 20 • written 10.1 years ago by gv ▴ 40

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1.6k

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DEXSeq splicing python SAM

9.1 years ago Fiona ▴ 70

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2.4k

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SGSeq analyzeFeatures Splicing

9.9 years ago Paolo Guarnieri ▴ 20

16 results • Page 1 of 1

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Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0

This makes a lot of sense, thank you very much!

Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0

Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…

Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k

Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…

Comment: Handling Epic Array Data by Melisa Tecik • 0

Thanks a lot for the help. You saved my day

Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k

The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…

Votes

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

Answer: Differene between the Wald and LRT test for time-series gene expression data

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

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