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9.4 years ago • updated 9.3 years ago
Paolo Guarnieri
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Answer: PCA plot suggestions
by
Michael Love
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For help with interpretation and design of analysis, I recommend working with a local statistician.
Due to time restrictions, I can only…
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by
ussarizona
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Hi Michael,
Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
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Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
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ATpoint
★
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That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
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Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
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