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sradb
•
reset
0
votes
2
replies
723
views
getSRAdbFile() does not work
SRAdb
GEOmetadb
13 months ago • updated 12 months ago
jfertaj
▴ 30
0
votes
0
replies
456
views
Best straightforward way from SRA-fastq to Phyloseq Object
SRAdb
2.1 years ago
Davide
• 0
0
votes
3
replies
779
views
getSRA() from the SRAdb package is returning an empty data.frame from the full SQL file, but not the demo file
SRAdb
getSRA()
updated 3.0 years ago by
James W. MacDonald
63k • written 3.0 years ago by
mac54
• 0
0
votes
0
replies
849
views
listSRAfile: Error in if (is.na(sra_acc$run[i])) { : argument is of length zero
SRAdb
3.4 years ago
Aditya
▴ 160
0
votes
0
replies
750
views
Query based on PMIDs
SRAdb
geoquery
4.8 years ago
Deepak Tanwar
▴ 10
2
votes
0
replies
893
views
Discrepancies between sradb, sraruninfo
sradb
5.3 years ago
langmea
▴ 20
1
vote
3
replies
2.9k
views
SRAdb: Error downloading sqlite files
sradb
written 5.9 years ago by
arielle
• 0
1
vote
3
replies
1.6k
views
problem with getSRAfile in SRAdb
SRAdb
updated 5.9 years ago by
Jack Zhu
▴ 170 • written 5.9 years ago by
shidaxia
• 0
2
votes
1
reply
1.1k
views
Uniting SRA Data into a single file
R
fastq
SRA
sradb
updated 6.9 years ago by
Martin Morgan
25k • written 6.9 years ago by
grecoandreauni
• 0
0
votes
1
reply
1.5k
views
Empty SQL query result for SRA run
sradb
6.9 years ago
Thomas Sandmann
▴ 90
0
votes
2
replies
1.2k
views
SRAdb "outdated" sqlite db
sradb
sqlite
outdated
updated 7.0 years ago by
Sean Davis
21k • written 7.0 years ago by
Nicolas Delhomme
▴ 320
0
votes
1
reply
1.7k
views
Error downloading using SRAdb
fastq
sradb
ftp
updated 7.5 years ago by
Jack Zhu
▴ 170 • written 7.5 years ago by
yugi1001
• 0
7
votes
5
replies
5.4k
views
Tutorial:
Accessing Public Genomic Data from Bioconductor
geoquery
geometadb
sradb
Tutorial
written 8.3 years ago by
Sean Davis
21k
2
votes
2
replies
1.7k
views
SRAdb: could not find function "sqliteTableFields"
sradb
sqlite
updated 8.9 years ago by
Sean Davis
21k • written 8.9 years ago by
dario.beraldi
• 0
0
votes
1
reply
1.1k
views
Analysis of Next Generation of Sequencing DAta
SRAdb
updated 8.9 years ago by
Sean Davis
21k • written 8.9 years ago by
Jerry Cholo
▴ 190
0
votes
8
replies
3.1k
views
error in SRAdb
SRAdb
SRAdb
updated 6.0 years ago by
djlemas
• 0 • written 9.2 years ago by
Faryabi, Robert NIH/NCI [F]
▴ 30
0
votes
0
replies
1.1k
views
SRAmetadb Bioconductor package; study record count low for 2013
SRAdb
SRAdb
9.3 years ago
Hugh Shanahan
▴ 50
0
votes
2
replies
1.4k
views
SRAmetadb Bioconductor package; study record count low for 2013
SRAdb
SRAdb
updated 9.3 years ago by
Jack Zhu
▴ 170 • written 9.3 years ago by
Al-Nasir, Jamie 2012
▴ 10
0
votes
0
replies
2.0k
views
SRAdb package - problems
Genetics
SRAdb
Genetics
SRAdb
10.3 years ago
Jack Zhu
▴ 170
0
votes
0
replies
1.4k
views
Is it possible to get SRA sample attributes for a given sample or experiment ID?
SRAdb
SRAdb
10.5 years ago
Vladimir Morozov
▴ 130
0
votes
2
replies
1.9k
views
getSRAdbFile cannot open URL
SRAdb
SRAdb
updated 11.0 years ago by
Martin Morgan
25k • written 11.0 years ago by
Nicholas Stong
▴ 10
0
votes
0
replies
1.1k
views
SRAdb: differences between the database and the NCBI website
PROcess
SRAdb
PROcess
SRAdb
11.2 years ago
Ben Woodcroft
▴ 40
0
votes
1
reply
1.1k
views
SRAdb: is the database missing some entries? (Ben Woodcroft)
SRAdb
SRAdb
updated 11.3 years ago by
Ben Woodcroft
▴ 40 • written 11.3 years ago by
Jack Zhu
▴ 170
0
votes
0
replies
1.2k
views
Cevap: Re: SRAdb error
SRAdb
SRAdb
11.5 years ago
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
1.6k
views
SRAdb error
SRAdb
SRAdb
updated 11.5 years ago by
Sean Davis
21k • written 11.5 years ago by
Ayten YIGITER
▴ 10
0
votes
0
replies
1.3k
views
Bioconductor Digest, Vol 95, Issue 7
PROcess
SRAdb
PROcess
SRAdb
12.7 years ago
Jack Zhu
▴ 170
0
votes
2
replies
1.2k
views
SRAdb listFastq error
SRAdb
SRAdb
updated 12.7 years ago by
Sean Davis
21k • written 12.7 years ago by
Mark Dunning
★ 1.1k
0
votes
8
replies
1.8k
views
'SRAdb useful for visualizing BAM files'
SRAdb
SRAdb
updated 13.5 years ago by
Jack Zhu
▴ 170 • written 13.5 years ago by
Paul Shannon
★ 1.1k
28 results • Page
1 of 1
Recent ...
Replies
Comment: Speeding up of DelayedArray::write_block()
by
Hervé Pagès
16k
Sorry for missing that one too. When writting blocks to an HDF5 file, the `write_block()` method for HDF5RealizationSink or TENxRealizatio…
Comment: Speeding up of DelayedArray::write_block()
by
Hervé Pagès
16k
Hi Koki, sorry for not seeing this before. > will SparseArraySeed in DelayedArray be replaced by this new sparse array format? Yes it wil…
Comment: Manual creation of qPCRset does not work
by
Ed Siefker
▴ 230
Thanks! This works for me.
Answer: Manual creation of qPCRset does not work
by
James W. MacDonald
63k
``` > mat <- matrix(rnorm(6*96), ncol = 6, nrow = 96, byrow = FALSE) > pd <- new("AnnotatedDataFrame", data = data.frame(1:6, row.names …
Answer: ukb Chromosomal position information was converted into SNPS
by
James W. MacDonald
63k
In my work, we almost always convert RSIDs to chr:pos because the former is ambiguous and changing whereas the latter is not. Which is like…
Votes
Answer: Manual creation of qPCRset does not work
Answer: MDS plot edgeR
A: legend with gradient in ComplexHeatmap
Comment: comparing contrasts in edger/lima using makeContrasts function
Answer: comparing contrasts in edger/lima using makeContrasts function
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komal.rathi
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Levi Waldron
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Lucas Schiffer
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Ed Siefker
▴ 230
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James W. MacDonald
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