Bioconductor Txdb.hsapiens.ucsc.hg38.knowngene

Showing : txdb.hsapiens.ucsc.hg38.knowngene • reset

votes

295

views

TxDb.Hsapiens.UCSC.hg38.knownGene

updated 9 months ago by James W. MacDonald 68k • written 9 months ago by linouhao ▴ 20

votes

replies

2.8k

views

MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

2.6 years ago davidhillis • 0

votes

replies

1.1k

views

microRNA TxDb.Hsapiens.UCSC.hg38.knownGene

2.8 years ago Lluís Revilla Sancho ▴ 760

votes

5.0k

views

install TxDb.Hsapiens.UCSC.hg38.knownGene

3.6 years ago Theresa ▴ 20

votes

replies

2.0k

views

TxDb.Hsapiens.UCSC.hg38.knownGene

updated 3.8 years ago by Hervé Pagès 16k • written 3.8 years ago by BioEpi • 0

votes

2.5k

views

TxDb.Hsapiens.UCSC.hg38.knownGene

updated 4.7 years ago by James W. MacDonald 68k • written 4.7 years ago by lukijanczukpawel • 0

votes

replies

1.6k

views

annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 5.7 years ago by kayla.interdonato ▴ 160 • written 5.7 years ago by jam526 • 0

votes

replies

1.6k

views

TxDb annotation TxDb.Hsapiens.UCSC.hg38.knownGene

updated 5.7 years ago by shepherl 4.2k • written 5.7 years ago by bernatgel ▴ 150

votes

1.2k

views

HLA TxDb.Hsapiens.UCSC.hg38.knownGene

updated 5.8 years ago by kayla.interdonato ▴ 160 • written 5.8 years ago by Kamil Slowikowski ▴ 30

votes

replies

4.0k

views

TxDb.Hsapiens.UCSC.hg38.knownGene TxDb.Mmusculus.UCSC.mm10.ensGene

updated 6.0 years ago by James W. MacDonald 68k • written 6.0 years ago by Aditya ▴ 160

votes

replies

2.8k

views

TxDb.Hsapiens.UCSC.hg38.knownGene subset TxDb object

6.4 years ago Ruichao.Zeng ▴ 20

vote

replies

3.9k

views

txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db

updated 7.8 years ago by Simon Anders ★ 3.8k • written 7.8 years ago by Mark Dunning ★ 1.1k

vote

replies

1.9k

views

s4vectors bumphunter txdb.hsapiens.ucsc.hg38.knowngene

8.0 years ago Leonardo Collado Torres ★ 1.1k

votes

replies

3.2k

views

annotation txdb.hsapiens.ucsc.hg38.knowngene bug

9.0 years ago shilin.zhao ▴ 40

votes

replies

4.1k

views

txdb txdb.hsapiens.ucsc.hg19.knowngene txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db annotation

9.5 years ago enricoferrero ▴ 680

15 results • Page 1 of 1

Recent ...

Replies

Comment: gene Set with high AUC score but no cells assigned to cell type by eja.hdrer33ge.r.m • 0

Understanding complex data results like those from AUCell can be challenging. For easier analysis and better data management on the go you …

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

Answer: DESeq2 design for haplotype MPRA by Michael Love 43k

> My goal is to identify which non-reference haplotypes are differentially active compared to the corresponding ref/ref haplotype within ea…

Answer: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by James W. MacDonald 68k

It seems fine on devel as well. ``` > BSgenome.Hsapiens.UCSC.hg38 | BSgenome object for Human | - organism: Homo sapiens | - provide…

Votes

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Awards • All