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Recent ...
Replies
Comment: get BM error
by
Fara
•
0
Thank you for your response.
The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
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James W. MacDonald
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That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this:
```
gzip -…
Answer: get BM error
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The genes you present are orthologous mappings from D. rerio to other teleost fishes, so it is probably going to be difficult to map to NCB…
Answer: How to retrieve gene ontology GO class from gene list?
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James W. MacDonald
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You can also use a combination of the `org.Hs.eg.db` and `GO.db` packages.
```
> library(GO.db)
> library(org.Hs.eg.db)
> go <- m…
Comment: Different Shrunk Log2FC according with reference
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I took a look and the posterior width for these (fairly rare) examples overlaps zero. So the posterior when it disagrees is not narrow.
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