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warning: example doesn't exist; while trying to build a package
bioconductor
package development
R
roxygen2
warning
6.6 years ago • updated 6.5 years ago
clarisbaby
• 0
3
votes
3
replies
2.0k
views
Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chunk
rmarkdown
suppressWarning
warning
updated 15 months ago by
Mike Smith
★ 6.5k • written 2.5 years ago by
Wolfgang Huber
★ 13k
0
votes
9
replies
2.2k
views
R-devel - BiocGenerics - Warning: multiple methods tables found for which
BioGenerics
warning
3.9 years ago
ullrich
▴ 20
0
votes
1
reply
2.1k
views
reading text file in R
warning
text
read.delim
updated 6.8 years ago by
Gordon Smyth
50k • written 6.8 years ago by
niutster
• 0
6
votes
3
replies
2.6k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 6.6 years ago by
Lluís Revilla Sancho
▴ 730 • written 6.6 years ago by
Paul Brennan
▴ 10
2
votes
1
reply
1.2k
views
Warnings messages can not we handles/hidden
warning message
warning
R
rhdf5
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
matiasb
• 0
0
votes
3
replies
988
views
PureCN warning: test.num.copy outside recommended range
PureCN
Warning
updated 6.1 years ago by
markus.riester
▴ 130 • written 6.1 years ago by
twtoal
▴ 10
5
votes
4
replies
1.4k
views
CMD check warning using Bioconductor as a source for the dependencies of an R package
Bioconductor
CMD check
warning
updated 5.3 years ago by
Martin Morgan
25k • written 5.3 years ago by
dong
▴ 10
2
votes
8
replies
2.5k
views
DelayedArray loading Warning causes stop in Bioconductor 3.12
DelayedArray
warning
installation
updated 3.9 years ago by
Hervé Pagès
16k • written 3.9 years ago by
inzirio
▴ 10
0
votes
1
reply
1.8k
views
makeTxdbfromUCSC Warning message
MakeTXDCfromUCSC
GenomicFeatures
warning
updated 8.8 years ago by
Marc Carlson
★ 7.2k • written 8.8 years ago by
Lillyhchen
▴ 10
3
votes
2
replies
1.9k
views
DEXSeq throws a warning - rank-deficient matrix
dexseq
fit
matrix
warning
updated 2.5 years ago by
koushik
• 0 • written 7.3 years ago by
Assa Yeroslaviz
★ 1.5k
11 results • Page
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Comment: How to arrange multiple plots into one page in NOISeq?
by
baptiste.bidon
• 0
Hello everyone, I am new on this site but not a noob in R (I guess). I am facing the same problem. For me, it depends on the NOIseq plot fu…
Comment: ChAMP installation issue
by
Tahirah
• 0
Hello. Could you please share how you managed to install ChAMP in R 4.4.0? I also have R 4.4.0 and Bioconductor 3.19 version and ChAMP fail…
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
by
James W. MacDonald
66k
Yes, you can use `limma`.
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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