Showing : yeast • reset
3
votes
4
replies
1.6k
views
ORF lengths using Yeast Annotation package
yeast genomicranges
9.6 years ago • updated 9.5 years ago dktarathym • 0
3
votes
3
replies
2.0k
views
Goseq and yeast
goseq yeast
9.2 years ago Marek Gierlinski ▴ 30
1
vote
2
replies
1.8k
views
GOSemSim problem for yeast proteins
GOSemSim yeast
updated 9.2 years ago by ★ 1.2k • written 9.2 years ago by ▴ 10
0
votes
2
replies
1.2k
views
AnnBuilder questions
Annotation GO Yeast hgu95av2 probe geneplotter AnnBuilder Annotation GO Yeast hgu95av2
updated 16.7 years ago by ★ 7.2k • written 16.7 years ago by ▴ 30
0
votes
0
replies
921
views
[julien.sylvestre@wotan.ens.fr: Re: pb using affy // Anova with R]
Microarray Yeast genefilter affy Microarray Yeast genefilter affy
22.0 years ago Laurent Gautier ▴ 150
0
votes
0
replies
1.0k
views
(1) Anova for 12 Affy yeast chips (Yg98) // (2) Problem fitting Li&Wong model with Affy 1.0 :
GO Yeast cdf genefilter affy PROcess GO Yeast cdf genefilter affy PROcess
22.0 years ago julien.sylvestre@wotan.ens.fr ▴ 50
0
votes
0
replies
983
views
pb using affy // Anova with R
Microarray Yeast affy Microarray Yeast affy
22.0 years ago julien.sylvestre@wotan.ens.fr ▴ 50
0
votes
0
replies
710
views
affy cel + cdf files content
Yeast cdf probe Yeast cdf probe
21.9 years ago julien.sylvestre@wotan.ens.fr ▴ 50
0
votes
2
replies
930
views
affy cel + cdf files content
Yeast cdf probe Yeast cdf probe
21.9 years ago Laurent Gautier ★ 2.3k
0
votes
0
replies
846
views
yeast annotation?
Annotation Yeast Annotation Yeast
21.8 years ago Anthony Rossini ▴ 530
0
votes
1
reply
930
views
problem reading yeast data
Microarray Yeast cdf Microarray Yeast cdf
updated 21.3 years ago by ★ 2.3k • written 21.3 years ago by ▴ 10
0
votes
0
replies
650
views
affy memory size and Windows
Yeast affy Yeast affy
21.2 years ago Virginia Marks ▴ 10
0
votes
1
reply
754
views
Question about affy
Yeast affy Yeast affy
updated 21.1 years ago by ★ 2.3k • written 21.1 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Annotating yeast ORFs with GO and KEGG
GO Yeast annotate Category GO Yeast annotate Category
updated 20.5 years ago by ▴ 70 • written 20.5 years ago by ▴ 80
0
votes
0
replies
877
views
Re: metaData
Annotation GO Yeast probe Annotation GO Yeast probe
20.3 years ago John Zhang ★ 2.9k
0
votes
0
replies
715
views
Problems with mas5calls for ygs98 chips
Yeast probe Yeast probe
18.2 years ago Jarno Tuimala ▴ 140
0
votes
3
replies
1.1k
views
Error doing Mas5 calculation with Simpleaffy package
Yeast affy simpleaffy Yeast affy simpleaffy
updated 20.0 years ago by ★ 1.1k • written 20.0 years ago by ▴ 50
0
votes
2
replies
818
views
affy package and segmentation error
Yeast Yeast
updated 19.5 years ago by ▴ 950 • written 19.5 years ago by ▴ 40
0
votes
0
replies
601
views
cdf environment for Yeast 2.0 array
Yeast cdf affy Yeast cdf affy
19.4 years ago Jakub Orzechowski Westholm ▴ 40
0
votes
3
replies
831
views
Yeast and LocuslinkIDs
GO Yeast GO Yeast
updated 19.3 years ago by 21k • written 19.3 years ago by ▴ 60
0
votes
5
replies
1.3k
views
affy Yeast 2.0 annotation
Annotation Yeast affy limma AnnBuilder Annotation Yeast affy limma AnnBuilder
updated 19.3 years ago by 6.7k • written 19.3 years ago by ▴ 320
0
votes
2
replies
1.1k
views
trouble with yeastann function in AnnBuilder
Annotation Yeast probe AnnBuilder safe Annotation Yeast probe AnnBuilder safe
updated 19.3 years ago by ▴ 10 • written 19.3 years ago by ▴ 320
0
votes
2
replies
1.5k
views
annaffy: YEAST vs. Affy YEAST_2 annotation
Annotation Yeast probe annaffy AnnBuilder Annotation Yeast probe annaffy AnnBuilder
updated 19.2 years ago by ▴ 220 • written 19.2 years ago by ▴ 320
0
votes
3
replies
1.1k
views
getting closer on YEAST 2.0 annotation...
Annotation GUI Yeast probe Annotation GUI Yeast probe
updated 19.2 years ago by ★ 2.9k • written 19.2 years ago by ▴ 320
0
votes
1
reply
1.0k
views
Cho et al.'s Expression Dataset in Yeast
Yeast cycle Yeast cycle
updated 19.0 years ago by ▴ 60 • written 19.0 years ago by ▴ 20
0
votes
1
reply
1.1k
views
simLL method in GOstats to measure distances between yeast genes
Yeast hgu95av2 ygs98 Yeast hgu95av2 ygs98
updated 19.0 years ago by ★ 5.5k • written 19.0 years ago by ▴ 100
0
votes
1
reply
1.0k
views
Several questions goCluster and GOstats...
Annotation GO Visualization Yeast goCluster Annotation GO Visualization Yeast goCluster
updated 18.7 years ago by ▴ 60 • written 18.7 years ago by ▴ 140
0
votes
2
replies
1000
views
SimpleAffy: problem with Yeast Genome 2.0 Array
Yeast cdf simpleaffy Yeast cdf simpleaffy
updated 18.5 years ago by ★ 2.2k • written 18.5 years ago by ▴ 170
0
votes
1
reply
1.0k
views
gocluster error: Ontology MF has no GO terms left. in
Annotation GO Yeast mgug4122a goCluster Annotation GO Yeast mgug4122a goCluster
updated 18.3 years ago by ▴ 60 • written 18.3 years ago by ▴ 30
0
votes
0
replies
743
views
Fwd: Re: Run GOHyperG without specifying a chip
Annotation Yeast Annotation Yeast
18.2 years ago Mikko Arvas ▴ 90
0
votes
1
reply
779
views
Unable to get expression-values from cel-files of yeast
Yeast cdf affy Yeast cdf affy
updated 18.2 years ago by 65k • written 18.2 years ago by ▴ 10
0
votes
2
replies
867
views
index between genes and pathways
Pathways GO Yeast Pathways GO Yeast
updated 20.5 years ago by ★ 5.5k • written 20.5 years ago by ▴ 80
0
votes
0
replies
1.0k
views
High-Throughput Data Analysis Course Announcement: Cold Spring Harbor Labs - June 14-27
SNP Microarray Proteomics Normalization Classification Cancer CGH Yeast SNP Microarray
18.2 years ago Mark Reimers ▴ 70
0
votes
1
reply
801
views
yeast2 LOCUSID environment
Annotation Yeast yeast2 Annotation Yeast yeast2
updated 17.9 years ago by ★ 2.9k • written 17.9 years ago by ▴ 320
0
votes
2
replies
888
views
Run GOHyperG on yeast without specifying a chip
Microarray Yeast PROcess Microarray Yeast PROcess
updated 17.8 years ago by 65k • written 17.8 years ago by ▴ 100
0
votes
1
reply
1.3k
views
[Bioc-devel] SNPscan -> SNPchip
SNP Annotation Yeast Biobase SNPchip SNP Annotation Yeast Biobase SNPchip
updated 17.5 years ago by ▴ 250 • written 17.5 years ago by ▴ 170
0
votes
1
reply
951
views
GOENTREZID2GO hard-coded in GOstats:makeGOGraph
Annotation GO Network Yeast graph GOstats Annotation GO Network Yeast graph GOstats
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ★ 1.1k
0
votes
0
replies
971
views
Differentially Expressed Genes in Time Series with Replications
Yeast cycle Yeast cycle
17.3 years ago peter robinson ▴ 300
0
votes
0
replies
593
views
SemSim GOCount question
GO Yeast GO Yeast
17.1 years ago Ariel Chernomoretz ▴ 170
0
votes
0
replies
576
views
Question about Yeast Microarray
Yeast Yeast
17.0 years ago Ajit Kulkarni ▴ 10
0
votes
0
replies
729
views
Yeast Tiling Array BPMAP
Yeast Yeast
16.9 years ago iromashk@student.umass.edu ▴ 30
0
votes
3
replies
1.2k
views
trouble using GCRMA
Yeast cdf gcrma Yeast cdf gcrma
updated 16.9 years ago by ▴ 200 • written 16.9 years ago by ▴ 10
0
votes
1
reply
1.6k
views
create an new AnnotatedDataFrame
Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio Survival
updated 16.8 years ago by 25k • written 16.8 years ago by ▴ 30
0
votes
1
reply
3.2k
views
RE : create an new AnnotatedDataFrame
Annotation Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio
updated 16.7 years ago by 25k • written 16.7 years ago by ▴ 30
0
votes
1
reply
873
views
Microarray data with outliers
Yeast Yeast
updated 16.5 years ago by 21k • written 16.5 years ago by ▴ 70
0
votes
5
replies
1.6k
views
KEGG & hyperGTest: an example?
Annotation Yeast Organism Annotation Yeast Organism
updated 16.5 years ago by ▴ 150 • written 16.5 years ago by ★ 1.1k
0
votes
10
replies
1.6k
views
how to build a GOstats-compatible annotation package for plasmodium falciparum?
Annotation Yeast GOstats Annotation Yeast GOstats
updated 16.5 years ago by ▴ 30 • written 16.5 years ago by ★ 1.1k
0
votes
0
replies
861
views
made4, memory issues
Network Clustering Cancer Yeast made4 Network Clustering Cancer Yeast made4
16.5 years ago Aedin Culhane ▴ 510
0
votes
0
replies
1.8k
views
Median-Interquartile Normalization
Microarray SystemsBiology Annotation GO Preprocessing Clustering Cancer Yeast Organism GO
16.5 years ago McGee, Monnie ▴ 300
0
votes
2
replies
1.1k
views
Probe pairs location on chips // ANOVA
Yeast ygs98 probe affy Yeast ygs98 probe affy
updated 22.0 years ago by ▴ 280 • written 22.0 years ago by ▴ 50
50 results • Page 1 of 1
Recent ...
Replies
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
Awards • All
Popular Question to Gordon Smyth 50k
Popular Question to Zainab • 0
Popular Question to Theo ▴ 10
Popular Question to gene_bioconductor ▴ 10
Popular Question to rohitsatyam102 ▴ 20
Locations • All
France, just now
Morocco, 1 minute ago
WEHI, Melbourne, Australia, 20 minutes ago
The city by the bay, 35 minutes ago
Sweden, 36 minutes ago
Traffic: 576 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6