Showing : zebrafish • reset
0
votes
2
replies
1.5k
views
Need help annotating Affymetrix 1.1ST microarrays
oligo annotation affymetrix microarrays zebrafish
updated 7.8 years ago by ★ 4.0k • written 7.8 years ago by ▴ 80
0
votes
1
reply
1.3k
views
Importing and Extracting Annotation
annotation zebrafish probe
updated 8.2 years ago by 66k • written 8.2 years ago by • 0
9
votes
1
reply
2.3k
views
News: Ensembl release 80 is out!
biomart Ensembl zebrafish Rat 1000 genomes phase 3 News
updated 9.1 years ago by ▴ 390 • written 9.1 years ago by ▴ 800
0
votes
2
replies
1.2k
views
Interspecies differential expression of orthologs with Edger
RNASeq Normalization Organism zebrafish edgeR
updated 9.8 years ago by 51k • written 9.8 years ago by ▴ 140
0
votes
0
replies
1.3k
views
Useful information about Ensembl release 76 mart databases
Transcription zebrafish Transcription zebrafish
9.9 years ago Thomas Maurel ▴ 800
0
votes
2
replies
1.8k
views
TxDb file for Drerio (ie zebrafish)
Organism zebrafish CRISPRseek Organism zebrafish CRISPRseek
updated 10.3 years ago by 66k • written 10.3 years ago by ▴ 10
1
vote
1
reply
1.8k
views
Mapping Affymetrix annotations with Bioconductor annotations
Annotation Organism zebrafish cdf affy AnnotationForge Annotation Organism zebrafish cdf
updated 10.7 years ago by 66k • written 10.7 years ago by ▴ 80
0
votes
1
reply
1.3k
views
ChIPpeakAnno, getAnnotation question
Annotation zebrafish convert biomaRt ChIPpeakAnno Annotation zebrafish convert biomaRt
updated 10.7 years ago by ★ 4.3k • written 10.7 years ago by ▴ 10
0
votes
1
reply
1.4k
views
ChIPpeakAnno, getAnnotation question
Annotation GO zebrafish convert biomaRt ChIPpeakAnno Annotation GO zebrafish convert
updated 10.7 years ago by ★ 4.3k • written 10.7 years ago by ★ 13k
0
votes
1
reply
1.1k
views
affymtrix transcript_cluster categories
Normalization zebrafish Normalization zebrafish
updated 10.8 years ago by 66k • written 10.8 years ago by ▴ 80
0
votes
2
replies
1.3k
views
blast probe clusters when using Affymetrix Gene Array Strips
zebrafish zebrafish
updated 10.8 years ago by 66k • written 10.8 years ago by ▴ 80
0
votes
0
replies
1.5k
views
Useful information about Ensembl release 71 mart databases
zebrafish PolyPhen SIFT affy genomes zebrafish PolyPhen SIFT affy genomes
11.2 years ago Thomas Maurel ▴ 800
0
votes
0
replies
1.3k
views
Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish biomaRt ideogram genomes zebrafish biomaRt ideogram genomes
11.3 years ago florian.hahne@novartis.com ★ 1.6k
0
votes
2
replies
1.8k
views
Help with Gviz \"IdeogramTrack\" and \"BioMartGeneTrackRegion\" commands
zebrafish biomaRt zebrafish biomaRt
updated 11.4 years ago by ★ 1.6k • written 11.4 years ago by ★ 13k
1
vote
1
reply
3.0k
views
goseq/nullp with non-native identifiers
Annotation GO zebrafish goseq Annotation GO zebrafish goseq
updated 11.8 years ago by ▴ 100 • written 11.8 years ago by ▴ 140
0
votes
1
reply
1.5k
views
Useful information about Ensembl release 67 mart databases
miRNA GO Caenorhabditis elegans Sus scrofa zebrafish PolyPhen SIFT miRNA GO Sus scrofa
12.1 years ago Thomas Maurel ▴ 800
0
votes
9
replies
1.9k
views
Mapping microarray probes to the genome using findOverlaps
Microarray Alignment Annotation zebrafish probe Biostrings GenomicFeatures Microarray
updated 13.3 years ago by 21k • written 13.3 years ago by 16k
0
votes
3
replies
1.7k
views
Mapping microarray probes to the genome using findOverlaps
Alignment Annotation zebrafish probe Alignment Annotation zebrafish probe
updated 13.3 years ago by 21k • written 13.3 years ago by ▴ 140
0
votes
0
replies
995
views
Agi4x44PreProcess - filter.probes function
Annotation GUI zebrafish probe PROcess Annotation GUI zebrafish probe PROcess
13.7 years ago Neel Aluru ▴ 460
0
votes
0
replies
1.1k
views
Agi4x44PreProcess
GUI zebrafish probe AgiMicroRna GUI zebrafish probe AgiMicroRna
13.7 years ago Neel Aluru ▴ 460
0
votes
1
reply
1.2k
views
Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation zebrafish probe DECIPHER Annotation zebrafish probe DECIPHER
updated 13.9 years ago by ★ 7.2k • written 13.9 years ago by ▴ 40
0
votes
1
reply
1.1k
views
Annotation in Agi4x44PreProcess
Annotation zebrafish probe Agi4x44PreProcess Annotation zebrafish probe Agi4x44PreProcess
updated 13.9 years ago by ★ 7.2k • written 13.9 years ago by ▴ 40
0
votes
0
replies
1.4k
views
AgiMicroRna - FilterMicroRna and SignificantMicroRna function
miRNA zebrafish probe AgiMicroRna miRNA zebrafish probe AgiMicroRna
14.1 years ago Neel Aluru ▴ 460
0
votes
1
reply
978
views
GOstats - zebrafish
Annotation GO zebrafish probe Annotation GO zebrafish probe
updated 14.1 years ago by 66k • written 14.1 years ago by ▴ 460
0
votes
0
replies
1.1k
views
Ensembl mart release 57: Useful information
SNP GO Homo sapiens zebrafish SNP GO Homo sapiens zebrafish
14.3 years ago Rhoda Kinsella ▴ 660
0
votes
6
replies
1.1k
views
annaffy can't saveHTML
Annotation zebrafish Annotation zebrafish
updated 14.4 years ago by 66k • written 14.4 years ago by ★ 1.5k
0
votes
1
reply
730
views
GOstats testing using EntrezGene IDs not in chip-specific annotation package?
GO zebrafish probe affy GOstats AnnotationDbi GO zebrafish probe affy GOstats
updated 14.4 years ago by ★ 2.0k • written 14.4 years ago by ★ 2.0k
0
votes
5
replies
1.3k
views
Agilent zebrafish4x44 database
zebrafish zebrafish
updated 14.6 years ago by ★ 1.3k • written 14.6 years ago by ▴ 460
0
votes
0
replies
822
views
Bsgenome Zv7 sequence data
Cancer Danio rerio zebrafish Cancer Danio rerio zebrafish
14.9 years ago Hervé Pagès 16k
0
votes
1
reply
880
views
siggenes: sam2html + affymetrix zebrafish
zebrafish zebrafish
15.0 years ago Bio Sam ▴ 60
0
votes
0
replies
972
views
problem using annotation database with annaffy
Annotation GO zebrafish annaffy Annotation GO zebrafish annaffy
15.1 years ago Georg Otto ▴ 510
0
votes
0
replies
951
views
Ensembl mart release 54: Useful information
Coverage zebrafish Coverage zebrafish
15.1 years ago Rhoda Kinsella ▴ 660
0
votes
0
replies
875
views
JoVE: New Video Articles on Biomedical Research Techniques
zebrafish zebrafish
15.1 years ago Moshe Pritsker, Editor, JoVE ▴ 20
0
votes
1
reply
1.4k
views
Group-wise gcrma normalization
Microarray Normalization Clustering zebrafish probe gcrma Microarray Normalization probe
updated 15.3 years ago by ★ 6.5k • written 15.3 years ago by ▴ 30
0
votes
2
replies
1.6k
views
Help with loading newly created custom annotation db into R session
Annotation GO GUI zebrafish probe Annotation GO GUI zebrafish probe
updated 15.5 years ago by 66k • written 15.5 years ago by ▴ 300
0
votes
1
reply
820
views
zebrafish annotation
Annotation zebrafish Annotation zebrafish
updated 15.8 years ago by ★ 7.2k • written 15.8 years ago by ▴ 60
0
votes
2
replies
1.5k
views
agilent zebrafish array annotation
Annotation zebrafish AnnBuilder PROcess AnnotationDbi Annotation zebrafish AnnBuilder
16.2 years ago Georg Otto ▴ 510
0
votes
0
replies
861
views
homologs for xenopus laevis
Xenopus laevis zebrafish biomaRt Xenopus laevis zebrafish biomaRt
16.8 years ago Mayte Suarez-Farinas ▴ 510
0
votes
2
replies
1.0k
views
simpleaffy QCstats and affyQAReport repost
zebrafish probe affy zebrafish probe affy
updated 16.9 years ago by ★ 1.1k • written 16.9 years ago by ▴ 70
0
votes
3
replies
1.2k
views
chromosome plot
zebrafish geneplotter zebrafish geneplotter
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ▴ 160
0
votes
0
replies
851
views
agilent zebrafish array annotation package
zebrafish zebrafish
18.4 years ago Georg Otto ▴ 510
0
votes
1
reply
1.2k
views
biomaRt gives only NA output
drosgenome1 zebrafish biomaRt drosgenome1 zebrafish biomaRt
updated 18.7 years ago by ▴ 420 • written 18.7 years ago by ▴ 150
0
votes
0
replies
1.3k
views
biomaRt zebrafish
zebrafish biomaRt zebrafish biomaRt
18.8 years ago Steffen Durinck ▴ 420
0
votes
0
replies
1.2k
views
biomaRt zebrafish
zebrafish biomaRt zebrafish biomaRt
18.8 years ago Georg Otto ▴ 510
0
votes
2
replies
1.1k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 18.9 years ago by ▴ 780 • written 18.9 years ago by ★ 1.4k
0
votes
1
reply
1.3k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 18.9 years ago by ★ 1.4k • written 18.9 years ago by ★ 1.1k
0
votes
4
replies
1.1k
views
Error in AnnBuilder writeAnnData2Pkg
Annotation zebrafish AnnBuilder Annotation zebrafish AnnBuilder
updated 19.1 years ago by ★ 2.9k • written 19.1 years ago by ▴ 510
0
votes
0
replies
837
views
QC questions
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
19.7 years ago Crispin Miller ★ 1.1k
0
votes
1
reply
777
views
problems using cdfenv
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
updated 19.7 years ago by 66k • written 19.7 years ago by ▴ 510
0
votes
1
reply
751
views
affymetrix zebrafish chip
zebrafish zebrafish
updated 19.9 years ago by 66k • written 19.9 years ago by ▴ 140
50 results • Page 1 of 1
Recent ...
Replies
Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2 by Michael Love 42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
Awards • All
Popular Question to swbarnes2 ★ 1.4k
Popular Question to Stephanie M. Gogarten ▴ 870
Popular Question to Jonathan ▴ 10
Popular Question to Frederico Moraes Ferreira ▴ 100
Popular Question to richardallenfriedmanbrooklyn ▴ 20
Locations • All
WEHI, Melbourne, Australia, 8 minutes ago
Canada, 1 hour ago
The city by the bay, 2 hours ago
United States, 3 hours ago
United States, 4 hours ago
Traffic: 408 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6