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flowStats for CyTOF
flowStats
25 days ago
tholmes
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0
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0
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64
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News:
Bioconductor Build System
Builds
Bioconductor
4 days ago
shepherl
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83
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ReactomeGSA for RNASeq
ReactomeGSA
BatchEffect
RNASeqData
11 days ago
Shaimaa Gamal
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0
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0
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148
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Empty table plot using plotGseaTable()
fgsea
26 days ago • updated 24 days ago
Chris
▴ 10
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0
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18
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News:
Drug Discovery
flowBeads
1 day ago
Zoe
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0
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81
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determine k during RUVSeq
RUVSeq
RUVnormalize
11 days ago
Ειρήνη
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30
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News:
Legacy Bioconductor Installation
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Bioconductor
3 days ago
shepherl
3.9k
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96
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Recommendations on deploying cytoviewer shiny.appobj to shinyapps.io?
cytoviewer
ShinyApps
18 days ago
neilzhao
▴ 30
1
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91
views
News:
Ensembl 112 has been released.
ensembldb
biomaRt
ensemblrelease
13 days ago
Aleena
▴ 30
0
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0
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60
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scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
RNASeq
scRNAseq
8 days ago
Bibi
• 0
0
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0
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48
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FindOverlaps, makeVennDiagram and "others"
ATACSeq
peaks
ATAC
ChIPpeakAnno
6 days ago
Raghad
• 0
0
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0
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108
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how to do Differential splicing from SGSeq analysis
DEXSeq
SGSeq
4 weeks ago • updated 28 days ago
Sara
• 0
0
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0
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12
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Spam:
Understanding Laser Hair Removal?
healthyControlsPresenceChecker
7 days ago
shahrozimmac
0
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45
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Job:
Post-Doc: Development of a new method to study the distribution of the effect sizes of QTL
StatisticalMethod
Evolution
QuantitativeTrailLocus
Genetics
JobPosting
7 days ago
pierre.devillemereuil
• 0
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0
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51
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Processing of curatedmetagenomics
curatedMetagenomicData
8 days ago
Edward
• 0
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0
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101
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ChIPseeker peak_Profile_Heatmap color palette
ChIPseeker
11 days ago
Anton01
• 0
0
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0
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154
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One error problem occurred caused by data type during using GDCprepare function of TCGAbiolinks to handle TCGAbiolinks BRCA data
GDCRNATools
TCGA
4 weeks ago • updated 24 days ago
glaciya2018
• 0
0
votes
0
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75
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GAGE results interpretation with gene-foldchange as input for cases of all-negative foldchange
GO
KEGG
gage
pathview
12 days ago
danalvoronov
▴ 10
0
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0
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69
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query regarding how to apply WGCNA on replicates
replicatesRNAseq
WGCNA
12 days ago
k200987
• 0
0
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0
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48
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Conditional analysis
GENESIS
6 days ago
SuperDad
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1
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352
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News:
Last Call: Nominations for Bioconductor Awards 2024! Deadline May 15
Recognition
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Bioconductor
Bioc204
9 weeks ago • updated 13 days ago
shepherl
3.9k
0
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0
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25
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News:
Online course: Network Analysis in Systems Biology with R/Bioconductor
SystemsBiology
Bioconductor
Network
3 days ago
info
▴ 10
0
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0
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33
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conumee with Infinium MethylationEPIC v2.0
conumee
2 days ago
Maximus
• 0
0
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0
replies
66
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Difference in Contrast in DiffBind
DiffBind
12 days ago
zzrammal
• 0
0
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0
replies
34
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Job:
Bioinformatics MSc University of York
bioinformatics
JobPosting
4 days ago
Daphne
• 0
0
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0
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51
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Problem in execuation of filterAndTrim command in DADA2
Bioconductor
dada2
5 days ago • updated 4 days ago
abhisek001
• 0
0
votes
0
replies
103
views
Could we detect difference at pathway level but not significant different at gene level?
GSVA
28 days ago
Chris
▴ 10
0
votes
0
replies
104
views
DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
25 days ago
yvonneh
• 0
178 results • Page
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Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
by
ATpoint
★ 4.2k
I don't have an answer to the "why" but maybe a simple reimplemention will do: ```r seqs <- c("ATCATCGTATCAAAGTC", "AAAACGTATCAAAGTC", "TG…
Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2
by
Guido Hooiveld
★ 4.0k
After checking `?DESeqDataSetFromMatrix` note this information: arguments provided to SummarizedExperiment including rowRanges and met…
Answer: Error in gseDO function
by
Guido Hooiveld
★ 4.0k
Yes, you are missing something. :-) For a GSEA you will need to use as input all genes that you are analyzing; these genes should be ran…
Comment: GSVA function
by
Robert Castelo
★ 3.3k
No, negative values may occur after log transformation when the `log(x)` is taken from a positive number `x with 0 < x < 1`, and therefore …
Comment: conumee with Infinium MethylationEPIC v2.0
by
sgomez
• 0
Hi Max, Could you try this? https://support.bioconductor.org/p/9136138/#9136840
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A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
A: DiffBind Batch Effect
A: DiffBind Batch Effect
C: DiffBind Batch Effect
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