0
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1
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885
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Gviz: Multiple BiomartGeneRegionTrack one object for Composite plots
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5.9 years ago stephen.williams ▴ 10
0
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0
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ps
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Job opening at Merck, NJ
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20.2 years ago rwin qian ▴ 50
0
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1
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1.1k
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installation of Biocunductor packages in My home directory.
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6.1 years ago vinod.acear ▴ 50
0
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0
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Bioconductor Digest, Vol 68, Issue 7
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15.6 years ago Matt Settles ▴ 70
0
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0
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Different results Limma vs LimmaGUI?
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18.1 years ago J.delasHeras@ed.ac.uk ★ 1.9k
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(no subject)
limma limma
19.7 years ago Paul Boutros ▴ 340
0
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0
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5.9 years ago jan.soderman • 0
0
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0
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DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
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9.5 years ago Guangchuang Yu ★ 1.2k
0
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1
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829
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Pathview won't colour even with matching IDs
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5.2 years ago francesco.gualdrini • 0
0
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0
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affymetrix in maanova, code
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18.4 years ago Morten ▴ 300
0
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2
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R version 3.3.0 beta crashing, how do I roll back?
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updated 8.1 years ago by 25k • written 8.1 years ago by ▴ 420
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0
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Run r codes in shell?
nem nem
19.3 years ago Malard, Joel M ▴ 100
0
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0
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setCategory flag and flag.pout argument problems
htqpcr
7.6 years ago h.roest • 0
0
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0
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duplicatecorrelations
14.0 years ago David ▴ 860
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0
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miRNA prediction against a gene list
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0
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0
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0
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0
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Error ambiguity characters in sequences
BSgenomeForge
8 months ago Bruno • 0
0
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0
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new arrayQualityMetrics 3.2.3 in release - was: arrayQualityMetrics 3.2.0 in Bioc release 2.7 is broken
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13.5 years ago Wolfgang Huber ★ 13k
0
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0
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installation of package 'qvalue' had non-zero exit status (
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2.3 years ago natasha.tilich • 0
0
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0
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Protein structure prediction
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8.1 years ago ashamscsoft • 0
4
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5
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15 months ago Robert Castelo ★ 3.3k
0
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0
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Missing values and MAS5
19.2 years ago Piotr K ▴ 10
0
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0
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517
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GOstats testing using EntrezGene IDs not in chip-specific annotation package?
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14.3 years ago Marc Carlson ★ 7.2k
0
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0
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0
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20.4 years ago J. Mcelwee ▴ 20
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miRNA and drugs
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4.5 years ago maria.k.pagoni • 0
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0
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Phyloseq/DEseq transformed data
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10.1 years ago Susan Holmes ▴ 120
0
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0
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Microarray analysis question
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0
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Error:"arrayQuality"
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graph classes: how to combine multiple graphs into a single graph
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13.3 years ago Daniela Beißer ▴ 20
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8.8 years ago jackipchiho ▴ 10
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20.0 years ago John Zhang ★ 2.9k
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0
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0
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0
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0
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2.6 years ago Niv • 0
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study partner bioconductor
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0
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course announcement: Bioconductor basics, 24-25 oct 2011, Longwood Medical Area, Boston
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0
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0
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Rsubread subjunc reporting 255 kb introns with exon limits mapping to A-rich region
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updated 8 months ago by 50k • written 8 months ago by • 0
0
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0
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BioC 2007
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17.2 years ago rgentleman ★ 5.5k
1,000 results • Page 2 of 20
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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