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limma with interaction term
R biostatistics limma Epigenetics
11 weeks ago • updated 9 weeks ago Jitendra ▴ 10
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limma design model for categorical variable
DNAMethylation limmaGUI biostatistics limma
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Job: Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
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23 months ago helene.ruffieux • 0
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Job: Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
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2.1 years ago helene.ruffieux • 0
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Job: Job opening - Data Scientist II - Fred Hutchinson Cancer Research Center
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2.2 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Post-Doctoral Research Fellow, Biostatistics - Seattle, WA
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3.9 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Data Sciences Statistician - Dana-Farber Cancer Institute
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4.2 years ago Patrick Kimes ▴ 10
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Job: Metabolomics Bioinformatics Postdoc Position at Steno Diabetes Center Copenhagen
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4.2 years ago Tommi Suvitaival ▴ 10
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Job: Post-Doctoral Research Fellow, Biostatistics, Bioinformatics and Computational Biology - Fred Hutchinson Cancer Research Center - Seattle, WA
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4.5 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Biostatistics Analyst (80-100%) at NEXUS Personalized Health Technologies, ETH Zurich, Switzerland
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4.8 years ago Michael Prummer • 0
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Job: Statistician I - Department of Data Sciences, Dana-Farber Cancer Institute
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5.1 years ago Patrick Kimes ▴ 10
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Job: Postdoctoral positions in drug discovery and genome data science
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5.2 years ago Thomas Girke ★ 1.7k
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Job: Biostatistics Analyst II - high throughput single-cell assays
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5.2 years ago careers • 0
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Job: Biostatistics Scientist II - high throughput single-cell assays
Biostatistics Job
5.2 years ago careers • 0
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Job: Data scientist postdoctoral position at Johns Hopkins
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5.3 years ago hjaarop1 • 0
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Job: Postdoctoral Position: Bioinformatics/data science
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5.4 years ago l.tomalin1987 • 0
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Job: PhD and PostDoc position in computational cancer biology in Milan
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5.5 years ago marschaefer • 0
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Job: Statistical Research Associate
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6.0 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Postdoctoral Fellowship in Statistical Genetics and Genomics at the University of Michigan
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6.1 years ago xzhousph • 0
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Job: APPLIED RESEARCH SCIENTIST II, Cancer Epidemiology dept., Moffitt Cancer Center, Tampa, FL
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6.2 years ago claudia.lopez-matamoros • 0
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Job: Bioinformatician/Biostatistician - Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI), Mainz, Germany
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6.3 years ago Federico Marini ▴ 150
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DESeq2 and betaPrior
deseq2 biostatistics
6.7 years ago • updated 6.6 years ago Elena Grassi ▴ 10
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Job: Research Fellow or Junior Research Fellow, Statistical Genetics and Genomics, Australia
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7.0 years ago hong.lee • 0
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News: May Institute Computation and statistics for mass spectrometry and proteomics
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7.2 years ago Laurent Gatto 1.6k
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Job: (Bio-)Statistician at dkfz, Heidelberg, Germany
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7.5 years ago m.hummel ▴ 10
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Job: PhD student, Bioinformatician and Bioinformatic Data Manager positions in the areas of Bioinformatics and Biostatistics at the University Medical Cen…
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7.9 years ago • updated 7.8 years ago Frank Kramer ▴ 60
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Job: PhD Positions in Computational Cancer Research
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8.0 years ago Bernd Fischer ▴ 550
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Calculating a score from fold change matrix of pair-wise rna-seq data
rna-seq deseq2 differential gene expression biostatistics
8.1 years ago g.atla ▴ 10
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Job: Data scientist/bioinformatician - Paris
Genomics metabolomics biostatistics data integration Job
8.5 years ago David Enot ▴ 30
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Job: PhD student and post-doctoral position (computational, molecular medicine)
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8.8 years ago Simon Anders ★ 3.7k
30 results • Page 1 of 1
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Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by Yveto • 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap by Rory Stark ★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds) by HAK • 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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