Bioconductor BiSeq

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813

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BiSeq

2.9 years ago thomas.koefoed • 0

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921

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Biseq Methylation DMP DMR RRBS

4.4 years ago i.s.castanho • 0

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1.2k

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bedgraph .cov wig biseq coverage

4.5 years ago akhaira • 0

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889

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BiSeq testClusters error dmr

4.5 years ago akhaira • 0

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1.2k

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biseq beta regression

4.5 years ago akhaira • 0

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595

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Biseq

4.5 years ago akhaira • 0

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1.6k

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BiSeq DMR

updated 4.5 years ago by James W. MacDonald 67k • written 4.5 years ago by akhaira • 0

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737

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BiSeq Coldata

4.6 years ago akhaira • 0

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815

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biseq R methylation

4.6 years ago AishaD • 0

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768

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biseq betaRegression RRBS Methylation

4.8 years ago i.s.castanho • 0

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899

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BiSeq Wald test Beta regression

5.9 years ago mira • 0

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1.2k

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biseq package installation r

updated 6.0 years ago by Martin Morgan 25k • written 6.0 years ago by lwh863 • 0

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1.1k

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biseq ccle

6.4 years ago spr ▴ 10

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1.3k

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dna methylation biseq

updated 7.0 years ago by Gordon Smyth 52k • written 7.0 years ago by ahmad.moousavi • 0

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1.3k

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biseq RRBS betaregression

7.7 years ago l.eijssen • 0

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1.5k

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biseq methylation dmr analysis

updated 8.0 years ago by Katja Hebestreit ▴ 130 • written 8.0 years ago by jjalmagro • 0

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2.1k

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biseq error trimClusters

updated 8.9 years ago by Katja Hebestreit ▴ 130 • written 9.0 years ago by kms68 • 0

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1.9k

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methylation linear model dmr bsseq biseq

9.1 years ago enricoferrero ▴ 660

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2.1k

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BiSeq readBismark

updated 9.2 years ago by James W. MacDonald 67k • written 9.2 years ago by Neel Aluru ▴ 460

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2.8k

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dmr methylation deseq2 bsseq biseq

updated 9.2 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.2 years ago by enricoferrero ▴ 660

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3.5k

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biseq fdr data results

9.7 years ago • updated 9.6 years ago mnaymik ▴ 10

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2.3k

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biseq RRBS SAAP-BS coverage

9.7 years ago maria.maqueda • 0

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1.9k

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BiSeq BiSeq

updated 10.9 years ago by David Iles ▴ 130 • written 10.9 years ago by Hans-Ulrich Klein ▴ 330

23 results • Page 1 of 1

Recent ...

Replies

Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Votes

A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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