Showing : BiSeq • reset
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1.1k
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Variogram-sill larger than 1, and negative p.li values in trimClusters-output
BiSeq
4.0 years ago thomas.koefoed • 0
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0
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1.1k
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Does it make sense to use Biseq for DMPs/DMCs in addition to DMRs?
Biseq Methylation DMP DMR RRBS
5.5 years ago i.s.castanho • 0
0
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1
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1.5k
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How to convert bedgraph.sorted or wig files to coverage files
bedgraph .cov wig biseq coverage
5.6 years ago akhaira • 0
0
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1
reply
1.2k
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testClusters and trimClusters error in BiSeq
BiSeq testClusters error dmr
5.6 years ago akhaira • 0
2
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8
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1.8k
views
Reason for NA in table after beta regression?
biseq beta regression
5.6 years ago akhaira • 0
0
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0
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785
views
What values to include for predictedMethNull in BiSeq
Biseq
5.6 years ago akhaira • 0
2
votes
10
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2.2k
views
How do you use the readBismark command in BiSeq properly?
BiSeq DMR
updated 5.6 years ago by 68k • written 5.6 years ago by • 0
1
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0
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976
views
Understanding ColData in BiSeq
BiSeq Coldata
5.7 years ago akhaira • 0
0
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1
reply
1.1k
views
Are the ordering of outputs of methylation matrix and coordinates from predictedMeth() the same?
biseq R methylation
5.7 years ago AishaD • 0
0
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1
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1.0k
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BiSeq - betaResults output only contains chr1 and chr2
biseq betaRegression RRBS Methylation
5.9 years ago i.s.castanho • 0
0
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0
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1.1k
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Beta Regression model with wald test - BiSeq - which test is used?
BiSeq Wald test Beta regression
7.0 years ago mira • 0
0
votes
1
reply
1.4k
views
Biseq installation error
biseq package installation r
updated 7.1 years ago by 25k • written 7.1 years ago by • 0
0
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0
replies
1.3k
views
BiSeq: Read in Relative Methylation data from CCLE
biseq ccle
7.5 years ago spr ▴ 10
0
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1
reply
1.5k
views
Problem in working with BiSeq - BSraw
dna methylation biseq
updated 8.1 years ago by 53k • written 8.1 years ago by • 0
0
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1
reply
1.6k
views
BiSeq - modelling options betaRegression
biseq RRBS betaregression
8.8 years ago l.eijssen • 0
0
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3
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1.9k
views
BiSeq. Model beta regression on resampled data.
biseq methylation dmr analysis
updated 9.1 years ago by ▴ 130 • written 9.1 years ago by • 0
0
votes
6
replies
2.5k
views
BiSeq trimClusters error
biseq error trimClusters
updated 10.0 years ago by ▴ 130 • written 10.1 years ago by • 0
1
vote
0
replies
2.1k
views
Multiple linear regression model for DMR detection?
methylation linear model dmr bsseq biseq
10.2 years ago enricoferrero ▴ 680
4
votes
4
replies
2.5k
views
Unable to read data using readBismark in BiSeq
BiSeq readBismark
updated 10.3 years ago by 68k • written 10.3 years ago by ▴ 460
1
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2
replies
3.2k
views
BS-seq differential methylation analysis using continuous variable
dmr methylation deseq2 bsseq biseq
updated 10.3 years ago by ★ 6.5k • written 10.3 years ago by ▴ 680
2
votes
15
replies
4.6k
views
BiSeq trimClusters FDR.loc confusion
biseq fdr data results
10.8 years ago • updated 10.7 years ago mnaymik ▴ 10
0
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5
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2.8k
views
SAAP-BS data analysis (RRBS) - BiSeq use and Coverage Histogram
biseq RRBS SAAP-BS coverage
10.8 years ago maria.maqueda • 0
0
votes
3
replies
2.2k
views
BiSeq - readBismark error
BiSeq BiSeq
updated 12.0 years ago by ▴ 130 • written 12.0 years ago by ▴ 330
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Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase by DamionLedner99 • 0
thanks for sharing!!! https://cran.r-project.org/
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Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
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Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
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Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
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Answer: Are transformed values from rlog /vst log2 normalized counts?
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