Bioconductor BiSeq

Showing : BiSeq • reset

votes

replies

1.9k

views

BiSeq readBismark

updated 8.5 years ago by James W. MacDonald 65k • written 8.5 years ago by Neel Aluru ▴ 460

votes

replies

3.0k

views

biseq fdr data results

9.0 years ago • updated 8.9 years ago mnaymik ▴ 10

votes

replies

922

views

biseq beta regression

3.8 years ago akhaira • 0

votes

replies

1.1k

views

BiSeq DMR

updated 3.9 years ago by James W. MacDonald 65k • written 3.9 years ago by akhaira • 0

vote

replies

2.5k

views

dmr methylation deseq2 bsseq biseq

updated 8.5 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.5 years ago by enricoferrero ▴ 660

vote

replies

1.7k

views

methylation linear model dmr bsseq biseq

8.4 years ago enricoferrero ▴ 660

vote

replies

572

views

BiSeq Coldata

3.9 years ago akhaira • 0

votes

921

views

biseq package installation r

updated 5.3 years ago by Martin Morgan 25k • written 5.3 years ago by lwh863 • 0

votes

replies

730

views

BiSeq Wald test Beta regression

5.2 years ago mira • 0

votes

604

views

biseq betaRegression RRBS Methylation

4.1 years ago i.s.castanho • 0

votes

636

views

biseq R methylation

4.0 years ago AishaD • 0

votes

replies

471

views

Biseq

3.8 years ago akhaira • 0

votes

725

views

BiSeq testClusters error dmr

3.8 years ago akhaira • 0

votes

917

views

bedgraph .cov wig biseq coverage

3.8 years ago akhaira • 0

votes

replies

746

views

Biseq Methylation DMP DMR RRBS

3.8 years ago i.s.castanho • 0

votes

replies

1.7k

views

BiSeq BiSeq

updated 10.2 years ago by David Iles ▴ 130 • written 10.2 years ago by Hans-Ulrich Klein ▴ 330

votes

629

views

BiSeq

2.2 years ago thomas.koefoed • 0

votes

replies

2.0k

views

biseq RRBS SAAP-BS coverage

9.0 years ago maria.maqueda • 0

votes

replies

1.9k

views

biseq error trimClusters

updated 8.2 years ago by Katja Hebestreit ▴ 130 • written 8.3 years ago by kms68 • 0

votes

replies

1.3k

views

biseq methylation dmr analysis

updated 7.3 years ago by Katja Hebestreit ▴ 130 • written 7.3 years ago by jjalmagro • 0

votes

1.1k

views

biseq RRBS betaregression

7.1 years ago l.eijssen • 0

votes

1.1k

views

dna methylation biseq

updated 6.3 years ago by Gordon Smyth 50k • written 6.3 years ago by ahmad.moousavi • 0

votes

replies

900

views

biseq ccle

5.7 years ago spr ▴ 10

23 results • Page 1 of 1

Recent ...

Replies

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length