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Showing :
BiSeq
•
reset
2
votes
15
replies
3.6k
views
BiSeq trimClusters FDR.loc confusion
biseq
fdr
data
results
9.8 years ago • updated 9.7 years ago
mnaymik
▴ 10
0
votes
6
replies
2.1k
views
BiSeq trimClusters error
biseq
error
trimClusters
updated 9.0 years ago by
Katja Hebestreit
▴ 130 • written 9.1 years ago by
kms68
• 0
0
votes
5
replies
2.3k
views
SAAP-BS data analysis (RRBS) - BiSeq use and Coverage Histogram
biseq
RRBS
SAAP-BS
coverage
9.8 years ago
maria.maqueda
• 0
0
votes
3
replies
1.9k
views
BiSeq - readBismark error
BiSeq
BiSeq
updated 11.0 years ago by
David Iles
▴ 130 • written 11.0 years ago by
Hans-Ulrich Klein
▴ 330
1
vote
2
replies
2.8k
views
BS-seq differential methylation analysis using continuous variable
dmr
methylation
deseq2
bsseq
biseq
updated 9.3 years ago by
Kasper Daniel Hansen
★ 6.5k • written 9.3 years ago by
enricoferrero
▴ 680
4
votes
4
replies
2.1k
views
Unable to read data using readBismark in BiSeq
BiSeq
readBismark
updated 9.3 years ago by
James W. MacDonald
68k • written 9.3 years ago by
Neel Aluru
▴ 460
0
votes
3
replies
1.5k
views
BiSeq. Model beta regression on resampled data.
biseq
methylation
dmr analysis
updated 8.1 years ago by
Katja Hebestreit
▴ 130 • written 8.1 years ago by
jjalmagro
• 0
0
votes
1
reply
1.3k
views
Problem in working with BiSeq - BSraw
dna methylation
biseq
updated 7.1 years ago by
Gordon Smyth
52k • written 7.1 years ago by
ahmad.moousavi
• 0
0
votes
1
reply
1.2k
views
Biseq installation error
biseq
package installation
r
updated 6.1 years ago by
Martin Morgan
25k • written 6.1 years ago by
lwh863
• 0
2
votes
10
replies
1.7k
views
How do you use the readBismark command in BiSeq properly?
BiSeq
DMR
updated 4.6 years ago by
James W. MacDonald
68k • written 4.6 years ago by
akhaira
• 0
0
votes
0
replies
1.1k
views
BiSeq: Read in Relative Methylation data from CCLE
biseq
ccle
6.5 years ago
spr
▴ 10
0
votes
0
replies
938
views
Does it make sense to use Biseq for DMPs/DMCs in addition to DMRs?
Biseq
Methylation
DMP
DMR
RRBS
4.5 years ago
i.s.castanho
• 0
0
votes
0
replies
917
views
Beta Regression model with wald test - BiSeq - which test is used?
BiSeq
Wald test
Beta regression
6.0 years ago
mira
• 0
0
votes
1
reply
788
views
BiSeq - betaResults output only contains chr1 and chr2
biseq
betaRegression
RRBS
Methylation
4.9 years ago
i.s.castanho
• 0
0
votes
1
reply
836
views
Are the ordering of outputs of methylation matrix and coordinates from predictedMeth() the same?
biseq
R
methylation
4.7 years ago
AishaD
• 0
1
vote
0
replies
764
views
Understanding ColData in BiSeq
BiSeq
Coldata
4.7 years ago
akhaira
• 0
0
votes
1
reply
843
views
Variogram-sill larger than 1, and negative p.li values in trimClusters-output
BiSeq
3.0 years ago
thomas.koefoed
• 0
0
votes
0
replies
607
views
What values to include for predictedMethNull in BiSeq
Biseq
4.6 years ago
akhaira
• 0
2
votes
8
replies
1.3k
views
Reason for NA in table after beta regression?
biseq
beta regression
4.6 years ago
akhaira
• 0
1
vote
0
replies
1.9k
views
Multiple linear regression model for DMR detection?
methylation
linear model
dmr
bsseq
biseq
9.2 years ago
enricoferrero
▴ 680
0
votes
1
reply
911
views
testClusters and trimClusters error in BiSeq
BiSeq
testClusters
error
dmr
4.6 years ago
akhaira
• 0
0
votes
1
reply
1.3k
views
BiSeq - modelling options betaRegression
biseq
RRBS
betaregression
7.8 years ago
l.eijssen
• 0
0
votes
1
reply
1.2k
views
How to convert bedgraph.sorted or wig files to coverage files
bedgraph
.cov
wig
biseq
coverage
4.6 years ago
akhaira
• 0
23 results • Page
1 of 1
Recent ...
Replies
Answer: DESeq2 adujsted p-value cutoff seemingly not working
by
James W. MacDonald
68k
From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
by
SofieK
• 0
Thank you, I will try this and see.
Comment: DiffBind - question on the use of filtered or unfiltered input data
by
deltaexploitss
• 0
Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…
Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status
by
Renuka
• 0
how you did it pls explain
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
by
James W. MacDonald
68k
If I understand correctly, you want to assess differential transcript abundances. If so, there are a couple of ways you can do that. One wa…
Votes
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
Comment: Unused arguments error without used arguments in GSVA?
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