Showing : BiSeq • reset
0
votes
1
reply
908
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Variogram-sill larger than 1, and negative p.li values in trimClusters-output
BiSeq
3.2 years ago thomas.koefoed • 0
0
votes
0
replies
988
views
Does it make sense to use Biseq for DMPs/DMCs in addition to DMRs?
Biseq Methylation DMP DMR RRBS
4.8 years ago i.s.castanho • 0
0
votes
1
reply
1.3k
views
How to convert bedgraph.sorted or wig files to coverage files
bedgraph .cov wig biseq coverage
4.8 years ago akhaira • 0
0
votes
1
reply
951
views
testClusters and trimClusters error in BiSeq
BiSeq testClusters error dmr
4.8 years ago akhaira • 0
2
votes
8
replies
1.4k
views
Reason for NA in table after beta regression?
biseq beta regression
4.8 years ago akhaira • 0
0
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0
replies
652
views
What values to include for predictedMethNull in BiSeq
Biseq
4.8 years ago akhaira • 0
2
votes
10
replies
1.8k
views
How do you use the readBismark command in BiSeq properly?
BiSeq DMR
updated 4.9 years ago by 68k • written 4.9 years ago by • 0
1
vote
0
replies
818
views
Understanding ColData in BiSeq
BiSeq Coldata
4.9 years ago akhaira • 0
0
votes
1
reply
905
views
Are the ordering of outputs of methylation matrix and coordinates from predictedMeth() the same?
biseq R methylation
5.0 years ago AishaD • 0
0
votes
1
reply
846
views
BiSeq - betaResults output only contains chr1 and chr2
biseq betaRegression RRBS Methylation
5.1 years ago i.s.castanho • 0
0
votes
0
replies
976
views
Beta Regression model with wald test - BiSeq - which test is used?
BiSeq Wald test Beta regression
6.2 years ago mira • 0
0
votes
1
reply
1.2k
views
Biseq installation error
biseq package installation r
updated 6.3 years ago by 25k • written 6.3 years ago by • 0
0
votes
0
replies
1.2k
views
BiSeq: Read in Relative Methylation data from CCLE
biseq ccle
6.7 years ago spr ▴ 10
0
votes
1
reply
1.3k
views
Problem in working with BiSeq - BSraw
dna methylation biseq
updated 7.3 years ago by 52k • written 7.3 years ago by • 0
0
votes
1
reply
1.3k
views
BiSeq - modelling options betaRegression
biseq RRBS betaregression
8.1 years ago l.eijssen • 0
0
votes
3
replies
1.6k
views
BiSeq. Model beta regression on resampled data.
biseq methylation dmr analysis
updated 8.3 years ago by ▴ 130 • written 8.3 years ago by • 0
0
votes
6
replies
2.2k
views
BiSeq trimClusters error
biseq error trimClusters
updated 9.2 years ago by ▴ 130 • written 9.3 years ago by • 0
1
vote
0
replies
1.9k
views
Multiple linear regression model for DMR detection?
methylation linear model dmr bsseq biseq
9.4 years ago enricoferrero ▴ 680
4
votes
4
replies
2.2k
views
Unable to read data using readBismark in BiSeq
BiSeq readBismark
updated 9.5 years ago by 68k • written 9.5 years ago by ▴ 460
1
vote
2
replies
2.9k
views
BS-seq differential methylation analysis using continuous variable
dmr methylation deseq2 bsseq biseq
updated 9.5 years ago by ★ 6.5k • written 9.5 years ago by ▴ 680
2
votes
15
replies
3.8k
views
BiSeq trimClusters FDR.loc confusion
biseq fdr data results
10.0 years ago mnaymik ▴ 10
0
votes
5
replies
2.4k
views
SAAP-BS data analysis (RRBS) - BiSeq use and Coverage Histogram
biseq RRBS SAAP-BS coverage
10.0 years ago maria.maqueda • 0
0
votes
3
replies
2.0k
views
BiSeq - readBismark error
BiSeq BiSeq
updated 11.2 years ago by ▴ 130 • written 11.2 years ago by ▴ 330
23 results • Page 1 of 1
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Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0
Hi. I am having the same issue, and haven't found a solution still.
Comment: Feature Counts - potential bug with outfile.jcounts by Tom • 0
[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…
Comment: Filtering after DESeq by caroline.zanchi • 0
I am going to try this right now, thanks !
Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq by ATpoint ★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Votes
A: Minfi issue: return code from pthread_create() is 22
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
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