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limma with interaction term
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DESeq2 and betaPrior
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Calculating a score from fold change matrix of pair-wise rna-seq data
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7.9 years ago • updated 7.8 years ago Frank Kramer ▴ 60
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5.1 years ago Patrick Kimes ▴ 10
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Job: Post-Doctoral Research Fellow, Biostatistics, Bioinformatics and Computational Biology - Fred Hutchinson Cancer Research Center - Seattle, WA
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2.2 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
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Job: Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
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Job: Biostatistics Analyst (80-100%) at NEXUS Personalized Health Technologies, ETH Zurich, Switzerland
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4.8 years ago Michael Prummer • 0
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Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
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biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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