Showing : ChipQC • reset
1
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3
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ChipQC Error: first error: could not find function "seqlevels<-"
software error chipqc
8.2 years ago tirza.doniger ▴ 20
0
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1
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2.3k
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PCR bottleneck coefficient (PBC)
chipqc
updated 8.2 years ago by ★ 5.2k • written 8.2 years ago by ▴ 140
1
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1
reply
2.3k
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ChIPQC bam and bed files question
chipqc
updated 8.2 years ago by ▴ 420 • written 8.2 years ago by • 0
0
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2
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1.3k
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ChIPQC plots for input samples
chipqc
updated 8.3 years ago by ▴ 420 • written 8.3 years ago by ▴ 140
0
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3
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1.6k
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ChIPQC reading more samples that it should
chipqc
8.3 years ago C T ▴ 140
1
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3
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1.6k
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ChIPQC : ChIPQCreport(dba_object) getting error when drawing plotFribl
ChIPQC
8.3 years ago ZheFrench ▴ 60
0
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1
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2.9k
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Unable to perform analysis on all the chromosomes with the latest version of ChIPQC 1.12
chipqc R
updated 8.3 years ago by ▴ 420 • written 8.3 years ago by • 0
0
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3
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2.0k
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ChIPQC failed on chrM
ChIPQC
updated 8.3 years ago by ▴ 420 • written 8.3 years ago by • 0
0
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1
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2.6k
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Error computing metrics with ChIPQC (Bioconductor v3.5, ChIPQC v2.1.12)
chipqc chipqcreport
updated 8.3 years ago by ▴ 420 • written 8.3 years ago by • 0
1
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3
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1.5k
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ChIPQC installation does not force latest DiffBind version
chipqc diffbind chipqcreport
updated 8.3 years ago by ▴ 420 • written 8.3 years ago by ▴ 50
1
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2
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1.4k
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ChIPQC report missing figures
chipqc software error
updated 8.3 years ago by ▴ 420 • written 8.3 years ago by ▴ 30
2
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1
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2.0k
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ChIPQC with GRCh38/hg38 requires manual loading of hg38 annotation
chipqc
updated 8.3 years ago by ▴ 420 • written 8.3 years ago by ▴ 50
2
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5
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2.7k
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ChIPQC gives Error subscript contains out-of-bounds ranges with custom transcript database
chipqc
updated 8.3 years ago by ▴ 420 • written 8.3 years ago by • 0
0
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4
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2.1k
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ChIPQCreport Total number of duplicates differs from multiqc/fastqc & RelCC is Inf
ChIPQC ChIPQCreport
updated 8.3 years ago by ▴ 420 • written 8.3 years ago by ▴ 60
4
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2
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1.7k
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ChIPQC : ChIPQCreport(experiment) swap memory overload
ChIPQC ChIPQCreport
updated 8.3 years ago by ▴ 420 • written 8.3 years ago by ▴ 60
0
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0
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1.0k
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ChIPQC comparison of controls - uniqueness error
chipqc
8.4 years ago Coby Viner ▴ 50
2
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5
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2.1k
views
Error involving ChIPQCreport
ChIPQC
updated 8.5 years ago by ▴ 420 • written 8.5 years ago by • 0
0
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4
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1.8k
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ChIPQC plotCoverageHist() and plotCC() not showing inputs
ChIPQC plotCoverageHist plotCC input
8.7 years ago atisou • 0
0
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0
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938
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ChIPQC plotSSD adds a legend even without a blacklist [minor]
chipqc ChIPQC
9.0 years ago Coby Viner ▴ 50
3
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4
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1.8k
views
ChIPQC on samples without peaks and wrong total reads
chipqc
updated 9.0 years ago by ▴ 420 • written 9.0 years ago by ▴ 10
3
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6
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1.9k
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ChIPQCreport yields a cryptic error if "Replicate" data is not specified
ChIPQC chipqc
updated 9.0 years ago by ★ 5.2k • written 9.0 years ago by ▴ 50
4
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6
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2.7k
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ChIPQC GRCh38 usage yields "Unsupported annotation:hg38"
chipqc ChIPQC
updated 9.0 years ago by ▴ 420 • written 9.0 years ago by ▴ 50
0
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3
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1.7k
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Problems with double read counts on ChIPQC
chipqc
updated 9.1 years ago by • 0 • written 9.1 years ago by • 0
1
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2
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3.3k
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'reached elapsed time limit' error on ChIPQC
ChIPQC
updated 9.2 years ago by 25k • written 9.2 years ago by • 0
5
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3
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2.4k
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ChIPQC error: "if (nrow(pv$binding) > 0) { : argument is of length zero"
chipqc
9.2 years ago Danielle Denisko ▴ 30
3
votes
7
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3.1k
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ChIPQC for a single sample (disabling facets)
ChipQc chipqc
9.2 years ago Coby Viner ▴ 50
1
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4
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2.0k
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ChIPQC error: Error in generating sample data
ChIPQC
updated 9.4 years ago by ★ 5.2k • written 9.4 years ago by ▴ 30
0
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1
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2.3k
views
Error in ChIPQC: "Error in if (res >= minval) { : missing value where TRUE/FALSE needed"
chipqc
updated 9.4 years ago by ★ 5.2k • written 9.6 years ago by ▴ 140
3
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1
reply
1.4k
views
shiftApply verbosity (in ChIPQC)
ChIPQC s4vectors
updated 9.4 years ago by ▴ 420 • written 9.6 years ago by ▴ 140
0
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1
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1.6k
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ChipQCSample error Error in `colnames<-`(`*tmp*`, value = c("A", "B", "C")) : length of 'dimnames' [2] not equal to array extent
chipseq chipqc
updated 9.4 years ago by ▴ 420 • written 9.4 years ago by • 0
4
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8
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2.8k
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ChIPQC and/or Diffbind - retrieving normalized read counts for peaks from single sample
DiffBind ChIPQC
9.7 years ago • updated 9.6 years ago JD ▴ 10
4
votes
2
replies
2.1k
views
Confusing error when running ChIPQC
chipqc chipseq
updated 10.0 years ago by ▴ 420 • written 10.0 years ago by ★ 7.9k
3
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9
replies
3.8k
views
ChIPQC and broadPeak input
chipseq chipqc chip-seq
10.1 years ago lindahove ▴ 10
0
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0
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1.2k
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ChIPQC showed errors 'nnodes' must be >= 1
software error bioconductor chipseq chipqc
10.1 years ago wangzhe335 • 0
3
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1
reply
3.9k
views
creating custom genome annotation for the ChIPQC package
ChIPSeq QC ChIPQC
updated 10.1 years ago by ▴ 420 • written 10.1 years ago by ▴ 160
4
votes
8
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3.0k
views
ChIPQC v1.4 fails uninformatively where version 1.2 works fine
chipqc
updated 10.2 years ago by ★ 5.2k • written 10.4 years ago by ▴ 140
1
vote
4
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2.7k
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ChIPQC: reads counts in bam do not match ones from samtools flagstat
chipqc
updated 10.5 years ago by ▴ 420 • written 10.5 years ago by • 0
0
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2
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3.9k
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Problem loading bamfiles to ChIPQC
ChIPQC
10.7 years ago sergio.espeso-gil • 0
0
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4
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2.2k
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ChiPQC and paired-end data
ChIPQC ChIPQC
updated 11.2 years ago by ▴ 20 • written 11.2 years ago by ▴ 340
89 results • Page 2 of 2
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Answer: DiffBind - question on the use of filtered or unfiltered input data by vejogos850 • 0
DiffBind - question on the use of filtered or unfiltered input data is the best to deal with, and it provides us the solutions that we are …
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Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…
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The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …
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Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k
I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …
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Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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