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News: News: Bioinformatics Summer School - July 2020 - UCLouvain (Belgium)
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5.8 years ago Laurent Gatto 1.6k
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News: LAST CHANCE: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
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7.9 years ago mnchoi67 ▴ 40
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News: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
bioconductor training course msstats proteomics News
7.9 years ago mnchoi67 ▴ 40
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BioC happening in 2018?
BioC 2018 Course
8.3 years ago s.munster ▴ 40
4
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News: Advanced R programming course - EMBL Heidelberg, 3-4 April 2017
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8.9 years ago • updated 8.7 years ago Laurent Gatto 1.6k
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News: Workshop: microRNA Analysis Using Next-Generation Sequencing - From microRNA profiling and prediction to extensive downstream analyses
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9.5 years ago adele.feuerstein • 0
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News: Course: Analysis of RNA-seq and ChIP-seq data, March 29th - April 1st, Oeiras, Portugal
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9.8 years ago Mark Dunning ★ 1.1k
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News: Course: Statistics and Computing in Genome Data Science, July 10-15, 2016
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9.8 years ago Martin Morgan 25k
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News: Looking to attend to a Bioconductor course for biologists in Europe
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updated 10.6 years ago by ▴ 370 • written 10.6 years ago by ▴ 20
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News: 4 days left to register for a short course on computational proteomics
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10.8 years ago Olga Vitek ▴ 40
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News: Course Announcement: Use R / Bioconductor for Sequence Analysis (Intermediate Course)
Course RNA-Seq Chip-seq Parallel News
10.8 years ago Martin Morgan 25k
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News: An introductory course to RNA-seq 17-19 March 2015
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10.8 years ago rcaloger ▴ 500
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News: Course announcement: CSAMA 2015 (13th ed.) Statistics and Computing in Genome Data Science
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10.9 years ago Wolfgang Huber ★ 13k
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News: Advanced Course: R programming and development 15-16. January 2015 (Thursday-Friday), EMBL Heidelberg
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11.2 years ago • updated 11.1 years ago Wolfgang Huber ★ 13k
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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