Showing : Cytoscape • reset
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Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 14 months ago by ▴ 30 • written 15 months ago by ▴ 90
3
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7
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2.0k
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"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
22 months ago Ortega-C ▴ 10
0
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0
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1.3k
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WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.1 years ago gianni.drm • 0
0
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1
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966
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Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 4.3 years ago by ▴ 30 • written 4.7 years ago by • 0
3
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4
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1.7k
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Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
5.9 years ago Matthew Thornton ▴ 380
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0
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Exploring upstream regulators (transcription factors, drugs, etc) of transcripts in R
microarray bioconductor cytoscape mapfromtranscripts
6.4 years ago lm795 ▴ 10
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0
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1.3k
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Help with generating network from gene expression data
gene expression network cytoscape
7.2 years ago torgeirous • 0
6
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8
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9.9k
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WGCNA export to cytoscape
wgcna cytoscape
updated 7.2 years ago by ▴ 60 • written 7.9 years ago by ▴ 60
0
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1
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1.5k
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WGNA export to external software
WGCNA network visualization external software cytoscape
updated 7.5 years ago by ★ 3.0k • written 7.5 years ago by • 0
9 results • Page 1 of 1
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Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k
We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…
Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k
It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…
Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Benjamin ▴ 20
I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…
Answer: Error in cnetplot by Guido Hooiveld ★ 4.1k
Unfortunately you did not show how you generated your input data (the object `enrichment`), nor did you show the output from `sessionInfo()…
Answer: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k
I think this is because Ensembl can assign different Gene IDs to "the same gene" if it is found both on a standard chromosome and a scaffol…
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Answer: Explannation for ROAST results
Comment: Limma comparing gene expression between base line and one treatment
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
clusterProfiler-GO enrichment Error
A: Machine learning in R book
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