Showing : Cytoscape • reset
1
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Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 23 months ago by ▴ 30 • written 23 months ago by ▴ 90
3
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7
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2.5k
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"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
2.5 years ago Ortega-C ▴ 10
0
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0
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1.6k
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WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.8 years ago gianni.drm • 0
0
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1
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1.2k
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Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 4.9 years ago by ▴ 30 • written 5.4 years ago by • 0
3
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4
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2.0k
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Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
6.5 years ago Matthew Thornton ▴ 390
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0
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Exploring upstream regulators (transcription factors, drugs, etc) of transcripts in R
microarray bioconductor cytoscape mapfromtranscripts
7.1 years ago lm795 ▴ 10
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Help with generating network from gene expression data
gene expression network cytoscape
7.9 years ago torgeirous • 0
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8
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WGCNA export to cytoscape
wgcna cytoscape
updated 7.9 years ago by ▴ 60 • written 8.5 years ago by ▴ 60
0
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1
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1.7k
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WGNA export to external software
WGCNA network visualization external software cytoscape
updated 8.2 years ago by ★ 3.0k • written 8.2 years ago by • 0
9 results • Page 1 of 1
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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release by Jeroen ▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k
I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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