Showing : Cytoscape • reset
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Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 16 months ago by ▴ 30 • written 16 months ago by ▴ 90
3
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7
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2.1k
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"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
23 months ago Ortega-C ▴ 10
0
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0
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1.4k
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WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.2 years ago gianni.drm • 0
0
votes
1
reply
980
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Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 4.4 years ago by ▴ 30 • written 4.8 years ago by • 0
3
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4
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1.8k
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Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
6.0 years ago Matthew Thornton ▴ 380
1
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0
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2.3k
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Exploring upstream regulators (transcription factors, drugs, etc) of transcripts in R
microarray bioconductor cytoscape mapfromtranscripts
6.5 years ago lm795 ▴ 10
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0
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1.4k
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Help with generating network from gene expression data
gene expression network cytoscape
7.3 years ago torgeirous • 0
6
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8
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10k
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WGCNA export to cytoscape
wgcna cytoscape
updated 7.3 years ago by ▴ 60 • written 8.0 years ago by ▴ 60
0
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1
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1.6k
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WGNA export to external software
WGCNA network visualization external software cytoscape
updated 7.6 years ago by ★ 3.0k • written 7.6 years ago by • 0
9 results • Page 1 of 1
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Comment: Unable to install a forged BSgenome package by James W. MacDonald 68k
R doesn't like the name of your package. I would bet that it's the minus sign, so maybe remove that from the name of the package and from t…
Comment: Unable to install a forged BSgenome package by JABEZ RAJU • 0
install.packages("E:/PhD data/RNAseq/TSS/BSgenome.Hnudivirus-2.NCBI.ViralProj14215", repos = NULL, type = "source") Installing package into…
Comment: DESeq2 with proteomics data by wook2014 • 0
You may need to do NA imputation before give the data to DEseq2 and there are study on DEseq2 performance on proteomics data, like :https:/…
Answer: Unable to install a forged BSgenome package by James W. MacDonald 68k
Add a repos = NULL to `install.packages`. You may also need to either move the file to a dir that doesn't have a space in the name or you […
Comment: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an by James W. MacDonald 68k
Have you figured out how to do this using tidy grammar? Using non-tidy grammar is quite simple, and perhaps you already know how to do that…
Votes
Answer: Unable to install a forged BSgenome package
Answer: How to combine two DESeq2 objects (dds) for analysis
How to combine two DESeq2 objects (dds) for analysis
How can I correctly use phyloseq with Docker?
A: DESeq2::sizeFactors() function does not output the sizeFactor table.
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