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Cytoscape
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Going back to default settings in RCy3
Cytoscape
RCy3
RCy
updated 13 months ago by
alex.pico
▴ 30 • written 14 months ago by
David R
▴ 90
3
votes
7
replies
1.9k
views
"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape
RCy3
Networkvisualization
WGCNA
21 months ago
Ortega-C
▴ 10
0
votes
0
replies
1.2k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape
Heatmap
heatmaps
WGCNA
2.0 years ago
gianni.drm
• 0
0
votes
1
reply
939
views
Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3
Cytoscape
R
Newick
Bioconductor
updated 4.2 years ago by
alex.pico
▴ 30 • written 4.6 years ago by
ellisjc
• 0
3
votes
4
replies
1.7k
views
Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3
Cytoscape
Rgraphviz
GOstats
5.8 years ago
Matthew Thornton
▴ 380
1
vote
0
replies
2.1k
views
Exploring upstream regulators (transcription factors, drugs, etc) of transcripts in R
microarray
bioconductor
cytoscape
mapfromtranscripts
6.3 years ago
lm795
▴ 10
0
votes
0
replies
1.3k
views
Help with generating network from gene expression data
gene expression
network
cytoscape
7.1 years ago
torgeirous
• 0
6
votes
8
replies
9.7k
views
WGCNA export to cytoscape
wgcna
cytoscape
updated 7.1 years ago by
harelarik
▴ 60 • written 7.8 years ago by
2323982403
▴ 60
0
votes
1
reply
1.5k
views
WGNA export to external software
WGCNA
network visualization
external software
cytoscape
updated 7.4 years ago by
Peter Langfelder
★ 3.0k • written 7.4 years ago by
je.maxfield
• 0
9 results • Page
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Comment: Overcoming confounding in batch effect correction
by
ATpoint
★ 4.7k
biostars.org and the [bioinformatics reddit][1] are suitable and have much larger audience than this forum here. [1]: https://www.reddi…
Comment: Overcoming confounding in batch effect correction
by
bbao
▴ 10
Thank you! And apologies for posting here. Do you know which forum I should go to in the future for questions like these?
Comment: For some reason I can't update BiocManager to 3.20
by
shepherl
4.1k
interesting. it could be since this is not your installation that it was installed by an admin that you do not have access to perform this…
Comment: Overcoming confounding in batch effect correction
by
ATpoint
★ 4.7k
Hi, this is not related to Bioconductor directly. And no, you cannot correct anything because in your own batch you only have a single samp…
Comment: MEDIPS - error using MEDIPS.CpGenrich
by
sg
• 0
I have the same error when I use 22 chrs with the paramenters chr.select: Error in h(simpleError(msg, call)) : error in evaluating the …
Votes
Answer: Store Matrix in DataFrame Cell
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
Comment: Overcoming confounding in batch effect correction
Overcoming confounding in batch effect correction
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