Bioconductor DEGS

Showing : DEGS • reset

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21k

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deseq2 rna-seq DEGs cooks cutoff

updated 2.2 years ago by rickap • 0 • written 5.3 years ago by aishu.jp ▴ 30

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4.8k

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RNASeq EnhancedVolcano DEGs

updated 2.8 years ago by Kevin Blighe ★ 3.9k • written 2.8 years ago by robledoj13 • 0

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4.0k

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heatmap DEGs RNAseq DESeq2

updated 4.7 years ago by mikhael.manurung ▴ 270 • written 4.7 years ago by danikadigiacomo • 0

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2.7k

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limma microarray DEGs p values lfc

6.9 years ago • updated 6.8 years ago rkp • 0

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2.3k

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DESeq2 DEGs

2.8 years ago • updated 2.7 years ago Ming ▴ 380

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2.3k

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edger DEGs normalization

updated 4.3 years ago by Gordon Smyth 50k • written 4.3 years ago by anikng ▴ 10

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2.1k

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limma heatmap DEGs

updated 6.2 years ago by Gordon Smyth 50k • written 6.2 years ago by lawarde.ankita1 ▴ 30

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1.3k

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heatmaps DEGs PCA

updated 3.2 years ago by Kevin Blighe ★ 3.9k • written 3.2 years ago by MOHAMMAD • 0

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1.1k

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edger degs paired design

updated 5.8 years ago by Gordon Smyth 50k • written 5.8 years ago by takumima ▴ 10

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1.1k

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edgeR DEGS common disperion

updated 6.7 years ago by Aaron Lun ★ 28k • written 6.7 years ago by baus87 • 0

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1.0k

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DEGs DESeq2

3.3 years ago 2021yearsold • 0

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981

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edger DEGs

4.3 years ago anikng ▴ 10

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976

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deseq2 rrpp DEGs RNAseq

updated 4.4 years ago by Michael Love 41k • written 4.4 years ago by gmchaput • 0

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971

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DESeq2 Nullcook'svalues 2x3 DEGs

3.1 years ago andreia ▴ 10

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952

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RNAseq edgeR DEGs

updated 2.1 years ago by Gordon Smyth 50k • written 2.7 years ago by Ming ▴ 380

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898

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edgeR DEGs

updated 2.1 years ago by Gordon Smyth 50k • written 2.1 years ago by RR • 0

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878

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clusterProfiler Bioconductor R DEGs

3.9 years ago tpm • 0

-6

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834

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complicated.contrast edgeR DEGs

19 months ago Mike • -60

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825

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mircomb mrna mirna degs interaction

3.8 years ago andreia ▴ 10

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780

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deseq2 mircomb degs dems

updated 3.8 years ago by Michael Love 41k • written 3.8 years ago by andreia ▴ 10

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769

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edgeR DEGs DESEQ2 RNASeqData

2.2 years ago Raito92 ▴ 60

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620

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DESeq2 Complicated.contrast DEGs

updated 19 months ago by Michael Love 41k • written 19 months ago by Mike • -60

22 results • Page 1 of 1

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length