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DNA Methylation
•
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0
votes
1
reply
1.3k
views
Estimate cell proportion from beta values using minfi estimateCellCounts?
minfi
cell proportion
estimateCellCounts
DNA Methylation
5.5 years ago
grayapply2009
• 0
1
vote
2
replies
2.9k
views
WGCNA on methylation data
normalization
DNA methylation
WGCNA
updated 6.2 years ago by
Peter Langfelder
★ 3.0k • written 6.2 years ago by
enora.fremy
• 0
1
vote
2
replies
1.4k
views
Comparing more than 2 experimental groups with MEDIPS?
medips
medip-seq
dna methylation
dmr analysis
updated 6.8 years ago by
Lukas Chavez
▴ 570 • written 6.8 years ago by
mtefit
• 0
7
votes
7
replies
2.1k
views
Using GenomicDataCommons R package to identify cases with both DNA methylation and gene expression data
R
gdc
rna-seq
dna methylation
updated 6.9 years ago by
Sean Davis
21k • written 6.9 years ago by
RichardJActon
▴ 50
1
vote
2
replies
1.8k
views
Odd Sample after SWAN normalisation, DNA methylation analysis EPIC array
minfi
normalization
outliers
dna methylation
densityplot
7.1 years ago
peter.fransquet
• 0
0
votes
0
replies
992
views
iEVORA wrapping up error
differential variability
dna methylation
iEVORA
DVP
7.3 years ago
poojitha.stemcell
▴ 10
0
votes
0
replies
1.3k
views
differential methylation analysis with RnBeads
rnbeads
methylation
methylationepic
dna methylation
7.5 years ago
gabrielrfries
• 0
0
votes
1
reply
1.4k
views
Problem in working with BiSeq - BSraw
dna methylation
biseq
updated 7.7 years ago by
Gordon Smyth
52k • written 7.7 years ago by
ahmad.moousavi
• 0
2
votes
5
replies
2.4k
views
Error when prepare the TCGAdata
tcgabiolinks
dna methylation
updated 7.8 years ago by
Marcel Ramos
700 • written 7.8 years ago by
michaelwxf2012
• 0
1
vote
1
reply
2.4k
views
Beta Value Analysis - DNA Methylation Dataset
dna methylation
illimina 450k methylation
beta
M
significance
updated 7.9 years ago by
James W. MacDonald
68k • written 7.9 years ago by
skids121
• 0
0
votes
0
replies
1.6k
views
DNA methylation 450k data - minfi - preprocessFunnorm - CNV cases vs non-CNV controls
CNV
minfi
preprocessing
dna methylation
8.4 years ago
Thomas
• 0
1
vote
2
replies
1.3k
views
Correlating DNA methylation and Illumina gene expression microarray data
microarray
HM450
dna methylation
cohcap
updated 8.6 years ago by
James W. MacDonald
68k • written 8.6 years ago by
poojitha.stemcell
▴ 10
0
votes
1
reply
1.4k
views
error when using bumphunter package with illumina 450k data
minfi
bumphunter
DNA methylation
illumina450k
updated 9.2 years ago by
James W. MacDonald
68k • written 9.2 years ago by
fleur_p90
• 0
13 results • Page
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Comment: EuroBioC2024 abstract submission is open!
by
Finnianfly
• 0
What specific requirements should be noted when preparing abstracts for presentation formats such as short talks, package demos, or posters…
Comment: Length of 'dimnames' [1] not equal to array extent
by
Francesco Silvestro
• 0
Resolved the error message!
Comment: WGCNA analysis on RNAseq and proteoimcs data
by
sum31278
• 0
Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks
Comment: European Bioconductor Conference 2023 planning
by
inadequate.peacock.iiag
• 0
I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…
Comment: ROAST compare results with complex design
by
Gordon Smyth
52k
It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.
Votes
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
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