Bioconductor DNA Methylation

Showing : DNA Methylation • reset

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1.1k

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minfi cell proportion estimateCellCounts DNA Methylation

4.7 years ago grayapply2009 • 0

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2.3k

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normalization DNA methylation WGCNA

updated 5.5 years ago by Peter Langfelder ★ 3.0k • written 5.5 years ago by enora.fremy • 0

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1.2k

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medips medip-seq dna methylation dmr analysis

updated 6.1 years ago by Lukas Chavez ▴ 570 • written 6.1 years ago by mtefit • 0

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1.8k

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R gdc rna-seq dna methylation

updated 6.2 years ago by Sean Davis 21k • written 6.2 years ago by RichardJActon ▴ 50

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1.4k

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minfi normalization outliers dna methylation densityplot

6.4 years ago peter.fransquet • 0

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877

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differential variability dna methylation iEVORA DVP

6.6 years ago poojitha.stemcell ▴ 10

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1.2k

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rnbeads methylation methylationepic dna methylation

6.8 years ago gabrielrfries • 0

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1.3k

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dna methylation biseq

updated 7.0 years ago by Gordon Smyth 52k • written 7.0 years ago by ahmad.moousavi • 0

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2.1k

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tcgabiolinks dna methylation

updated 7.0 years ago by Marcel Ramos 700 • written 7.1 years ago by michaelwxf2012 • 0

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1.9k

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dna methylation illimina 450k methylation beta M significance

updated 7.2 years ago by James W. MacDonald 67k • written 7.2 years ago by skids121 • 0

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1.4k

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CNV minfi preprocessing dna methylation

7.7 years ago Thomas • 0

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1.1k

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microarray HM450 dna methylation cohcap

updated 7.9 years ago by James W. MacDonald 67k • written 7.9 years ago by poojitha.stemcell ▴ 10

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1.3k

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minfi bumphunter DNA methylation illumina450k

updated 8.5 years ago by James W. MacDonald 67k • written 8.5 years ago by fleur_p90 • 0

13 results • Page 1 of 1

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Answer: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Just fit a model `~condition + experiment` where `condition` has three levels A, B and C. Ideally, use limma and include duplicate correlat…

Comment: Error in get_anno_data(ontology) : ontology not supported yet... by GODseeker • 0

thank u so much ,god bless u,my dear friend.

Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi @gordonsmyth and @weishi, Firstly, thank you for offering your time to develop the junction quantification module further. This is gre…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Hi Tim, Thanks for your reply! Yes, my data is 450K, and it is TCGA methylation data downloaded by TCGAbiolinks. The problem is that I can …

Answer: Error in get_anno_data(ontology) : ontology not supported yet... by Guido Hooiveld ★ 4.1k

Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…

Votes

A: Advice on correcting for batch effect using DESeq2

Comment: Feature Counts - potential bug with outfile.jcounts

Answer: Feature Counts - potential bug with outfile.jcounts

Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

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Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k