Bioconductor DNA methylation

Showing : DNA methylation • reset

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1.3k

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minfi cell proportion estimateCellCounts DNA Methylation

5.5 years ago grayapply2009 • 0

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2.9k

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normalization DNA methylation WGCNA

updated 6.2 years ago by Peter Langfelder ★ 3.0k • written 6.2 years ago by enora.fremy • 0

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1.3k

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medips medip-seq dna methylation dmr analysis

updated 6.8 years ago by Lukas Chavez ▴ 570 • written 6.8 years ago by mtefit • 0

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2.1k

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R gdc rna-seq dna methylation

updated 6.9 years ago by Sean Davis 21k • written 6.9 years ago by RichardJActon ▴ 50

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1.8k

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minfi normalization outliers dna methylation densityplot

7.1 years ago peter.fransquet • 0

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991

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differential variability dna methylation iEVORA DVP

7.3 years ago poojitha.stemcell ▴ 10

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1.3k

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rnbeads methylation methylationepic dna methylation

7.5 years ago gabrielrfries • 0

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1.4k

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dna methylation biseq

updated 7.7 years ago by Gordon Smyth 52k • written 7.7 years ago by ahmad.moousavi • 0

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2.4k

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tcgabiolinks dna methylation

updated 7.8 years ago by Marcel Ramos 700 • written 7.8 years ago by michaelwxf2012 • 0

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2.4k

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dna methylation illimina 450k methylation beta M significance

updated 7.9 years ago by James W. MacDonald 68k • written 7.9 years ago by skids121 • 0

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1.6k

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CNV minfi preprocessing dna methylation

8.4 years ago Thomas • 0

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1.3k

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microarray HM450 dna methylation cohcap

updated 8.6 years ago by James W. MacDonald 68k • written 8.6 years ago by poojitha.stemcell ▴ 10

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1.4k

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minfi bumphunter DNA methylation illumina450k

updated 9.2 years ago by James W. MacDonald 68k • written 9.2 years ago by fleur_p90 • 0

13 results • Page 1 of 1

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Comment: WGCNA analysis on RNAseq and proteoimcs data by sum31278 • 0

Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks

Comment: European Bioconductor Conference 2023 planning by inadequate.peacock.iiag • 0

I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…

Comment: ROAST compare results with complex design by Gordon Smyth 52k

It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.

Answer: ROAST compare results with complex design by James W. MacDonald 68k

You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…

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Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

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