Bioconductor DNA methylation

Showing : DNA methylation • reset

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954

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minfi cell proportion estimateCellCounts DNA Methylation

4.2 years ago grayapply2009 • 0

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1.9k

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normalization DNA methylation WGCNA

updated 5.0 years ago by Peter Langfelder ★ 3.0k • written 5.0 years ago by enora.fremy • 0

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995

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medips medip-seq dna methylation dmr analysis

updated 5.5 years ago by Lukas Chavez ▴ 570 • written 5.6 years ago by mtefit • 0

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1.6k

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R gdc rna-seq dna methylation

updated 5.6 years ago by Sean Davis 21k • written 5.6 years ago by RichardJActon ▴ 50

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1.2k

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minfi normalization outliers dna methylation densityplot

5.9 years ago peter.fransquet • 0

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769

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differential variability dna methylation iEVORA DVP

6.1 years ago poojitha.stemcell ▴ 10

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1.1k

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rnbeads methylation methylationepic dna methylation

6.3 years ago gabrielrfries • 0

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1.1k

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dna methylation biseq

updated 6.5 years ago by Gordon Smyth 51k • written 6.5 years ago by ahmad.moousavi • 0

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1.8k

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tcgabiolinks dna methylation

updated 6.5 years ago by Marcel Ramos 700 • written 6.5 years ago by michaelwxf2012 • 0

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1.5k

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dna methylation illimina 450k methylation beta M significance

updated 6.7 years ago by James W. MacDonald 66k • written 6.7 years ago by skids121 • 0

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1.2k

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CNV minfi preprocessing dna methylation

7.2 years ago Thomas • 0

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998

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microarray HM450 dna methylation cohcap

updated 7.4 years ago by James W. MacDonald 66k • written 7.4 years ago by poojitha.stemcell ▴ 10

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1.1k

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minfi bumphunter DNA methylation illumina450k

updated 8.0 years ago by James W. MacDonald 66k • written 8.0 years ago by fleur_p90 • 0

13 results • Page 1 of 1

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Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100

Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz

Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k

The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …

Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k

You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.

Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0

In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…

Answer: Design formula, numeric contrast, and lfcshrink in deseq2 by Michael Love 42k

For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…

Votes

Comment: Most enriched pathway is not expressed when modifying universe parameter

Time-course, comparison of two groups

Answer: Behaviour of featureCounts when quantifying multi-mapping reads

Answer: GESA with certain gene list returns no result with human genom, but many result

Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`

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