Bioconductor DNAMethylation

Showing : DNAMethylation • reset

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1.4k

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DNAMethylation QSEA MEDIP

2.8 years ago rtrivedi1 ▴ 10

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2.2k

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DNAMethylation ChAMP

updated 9 weeks ago by sup0903 • 0 • written 3.4 years ago by Hongbii • 0

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1.1k

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DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray

updated 12 months ago by Tim Peters ▴ 170 • written 12 months ago by Grace • 0

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932

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DNAMethylation missMethyl

updated 13 months ago by belinda.phipson ▴ 40 • written 13 months ago by Joana • 0

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444

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DNAMethylation MethylationArray methylationArrayAnalysis illumina

11 weeks ago mikat • 0

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386

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DNAMethylation limmaGUI biostatistics limma

updated 10 weeks ago by Gordon Smyth 50k • written 11 weeks ago by Jitendra ▴ 10

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173

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DNAMethylation cfMeDIP-seq cfDNA qsea

updated 5 weeks ago by Simon Pearce • 0 • written 11 weeks ago by User3088 • 0

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256

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DNAMethylation limma methylationArrayAnalysis

9 days ago • updated 3 days ago hortense96 • 0

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312

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 16 days ago by Tim Peters ▴ 170 • written 24 days ago by s.malik • 0

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239

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 7 weeks ago by belinda.phipson ▴ 40 • written 7 weeks ago by s.malik • 0

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385

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DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest

updated 9 weeks ago by James W. MacDonald 65k • written 9 weeks ago by rae.alshammari ▴ 10

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DNAMethylation DMRcate

23 days ago Macsue • 0

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487

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DNAMethylation missMethyl Pathways

12 months ago Grace • 0

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535

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DNAMethylation wateRmelon Computation minfi

20 months ago calen.p.ryan • 0

14 results • Page 1 of 1

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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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