Showing : DNASeq • reset
9
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8
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9.9k
views
DEseq2 extended to open chromatin anlaysis: normalization, dispersion fit, and "too many" differences
deseq2 dnaseq
updated 11.3 years ago by 43k • written 11.3 years ago by ▴ 100
8
votes
9
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7.4k
views
ChIPseq-style peak calling for paired-end sequencing?
Chipseq DNAseq ATAC bayespeak narrowpeaks
updated 10.6 years ago by 53k • written 10.7 years ago by ▴ 140
3
votes
2
replies
1.9k
views
Get a complete view of a long DNA sequence of a Biostrings object in R
biostrings subsetting View dnastring dnaseq
updated 10.4 years ago by 68k • written 10.4 years ago by • 0
2
votes
3
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2.1k
views
Doubt about WL in cn.mops
dnacopy dnaseq genomic cn.mops cnv
updated 7.5 years ago by ▴ 540 • written 7.5 years ago by • 0
1
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0
replies
1.8k
views
Bioconductor Employment: Statistical Research Associate
DNASeq Cancer DNASeq Cancer
14.1 years ago Martin Morgan 25k
0
votes
1
reply
1.6k
views
why merged paired end reads still have strand infomation?
dnaseq rtracklayer paired-end reads
8.5 years ago zwfanwz678 • 0
0
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1
reply
1.5k
views
How to identify Disease biomarkers " DNA sequences as biomarkers "
dnaseq pathway analysis protein biomarkers
8.0 years ago emadelhewihy • 0
0
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0
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1.4k
views
Doubt about the interpretation of cn.mops tumor vs normal results
cn.mops dnaseq bioinformatics
7.4 years ago Cased • 0
0
votes
0
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962
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Error in fragEnds[, 1] : incorrect number of dimensions while using printWigFile function in Basic4Cseq package
GenomicInteractions Basic4Cseq DNASeq GenomicFiles
4.5 years ago koushik • 0
0
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0
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1.0k
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Compare DNA sequence pairs and compute lengths and coordinates
DNASeq CNEr
4.1 years ago Md Abrar • 0
0
votes
1
reply
649
views
Using DESeq2 for Analyzing AMR Gene Variations in Water Samples Post-Treatment
DESeq2 NanoporeRNASeq DNASeq
updated 17 months ago by 43k • written 17 months ago by • 0
0
votes
4
replies
4.7k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq rstudio fasta Biostrings csv
4.4 years ago HELEN • 0
0
votes
0
replies
1.1k
views
Job: Computational postdoctoral fellow for cancer disparities research (Boston University)
DNASeq RNASeq SingleCell
4.5 years ago camp ▴ 10
0
votes
1
reply
2.0k
views
Newbie - Adding Labels to Individual Genes with ggbio?
r ggbio ggplot2 dnaseq genomicranges
updated 10.5 years ago by ▴ 130 • written 10.5 years ago by • 0
0
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0
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2.3k
views
Job: Bioinformatics Analyst at University of Cambridge, Cancer Research UK Cambridge Institute
job jobs rnaseq chipseq dnaseq Job
10.3 years ago Rory Stark ★ 5.2k
0
votes
0
replies
1.7k
views
any ideas on a workflow for exome seq data analysis with R?
exome dnaseq WES
9.6 years ago arvand.akbari • 0
0
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0
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1.4k
views
Centipede foot printing export
footprinting centipede atac-seq dnaseq
8.8 years ago rbronste ▴ 60
17 results • Page 1 of 1
Recent ...
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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice by Gordon Smyth 53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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