8 weeks ago • updated 2 days ago
shepherl
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7
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617
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3
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18
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2.9k
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10 months ago • updated 8 days ago
shepherl
3.8k
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4
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705
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0
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3
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512
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0
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2
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514
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11 months ago • updated 10 months ago
Franck RICHARD
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0
0
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2
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851
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12 months ago • updated 10 months ago
shepherl
3.8k
3
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6
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1.1k
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updated 13 months ago by
darrelvanhoy
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written 14 months ago by
shepherl
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879
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14 months ago
Amanda D. Clark
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758
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17 months ago
Robert Castelo
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3.3k
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557
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2
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741
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18 months ago
shepherl
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4
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1.1k
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2.1 years ago • updated 18 months ago
shepherl
3.8k
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0
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710
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18 months ago
shepherl
3.8k
4
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0
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650
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0
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3
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806
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updated 22 months ago by
Gordon Smyth
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written 22 months ago by
Jonathan
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0
0
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0
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609
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2.1 years ago
shepherl
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819
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4
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2
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1.2k
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2.6 years ago
Guillaume Devailly
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60
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2
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1.5k
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updated 2.6 years ago by
Mike Smith
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written 2.6 years ago by
Franck
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1
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840
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0
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0
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796
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2.8 years ago
shepherl
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9
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1.6k
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updated 2.8 years ago by
kayla.interdonato
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160
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written 2.9 years ago by
athief
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20
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715
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0
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797
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3.0 years ago
shepherl
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0
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871
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0
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732
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4.1 years ago
shepherl
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880
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0
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809
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0
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1
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959
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1.2k
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1.1k
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1
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1000
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1.3k
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0
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1
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2.0k
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updated 8.4 years ago by
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written 8.4 years ago by
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3
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1
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1.2k
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updated 8.9 years ago by
Martin Morgan
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written 8.9 years ago by
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Answer: ATACseq merge peaks
by
ATpoint
★
4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴
10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★
4.0k
I do not know this decontamination tool you use but generally:
If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
•
0
Thank you for your comment!
I'll review my code from top to bottom.
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