Bioconductor Filter

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loop filter

written 6.5 years ago by kritikamish99 ▴ 10

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3.5k

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bioconductor mas5 perfectmatch affymetrixchip filter

updated 9.2 years ago by James W. MacDonald 65k • written 9.2 years ago by svlachavas ▴ 830

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2.7k

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probe filter subset gene symbol affy

9.2 years ago alakatos ▴ 130

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1.3k

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variantannotation vcf fixed filter

9.4 years ago • updated 9.3 years ago Anna N. • 0

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3.2k

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DGElist filter edgeR

updated 6.9 years ago by Gordon Smyth 50k • written 6.9 years ago by alakatos ▴ 130

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3.1k

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deseq filter reads

9.3 years ago ccheung • 0

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781

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filter deseq2

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by charles.foster ▴ 160

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697

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flowCore openCyto Summary Result Filter

updated 4.0 years ago by Jake Wagner ▴ 310 • written 4.1 years ago by noviello • 0

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914

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R filter limma Normalization Microarray

13 months ago Abdul ▴ 20

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703

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filter deseq2

updated 12 months ago by Michael Love 42k • written 13 months ago by PD • 0

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1.3k

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flowcore gate subsetting filter

updated 8.7 years ago by Jiang, Mike ★ 1.3k • written 8.7 years ago by peterfoster ▴ 20

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1.0k

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missing data filter

updated 8.4 years ago by James W. MacDonald 65k • written 8.4 years ago by rgescudero • 0

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1.3k

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limma filter genelist differential gene expression

updated 7.6 years ago by Gordon Smyth 50k • written 7.6 years ago by bi_Scholar • 0

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1.8k

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deseq2 filter genefilter

updated 6.5 years ago by Michael Love 42k • written 6.5 years ago by Björn • 0

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1.1k

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rtracklayer gff filter

updated 5.3 years ago by Michael Lawrence ★ 11k • written 5.3 years ago by alslonik • 0

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554

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filter gate_quad_tmix gt_gating

2.2 years ago • updated 2.0 years ago Pierre • 0

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1.3k

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RNA WGCNA filter

4.9 years ago modarzi ▴ 10

17 results • Page 1 of 1

Recent ...

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Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k

Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…

Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Dario Strbenac ★ 1.5k

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