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3.5k

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bioconductor mas5 perfectmatch affymetrixchip filter

updated 9.2 years ago by James W. MacDonald 65k • written 9.2 years ago by svlachavas ▴ 830

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3.8k

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loop filter

written 6.5 years ago by kritikamish99 ▴ 10

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3.2k

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DGElist filter edgeR

updated 6.8 years ago by Gordon Smyth 50k • written 6.8 years ago by alakatos ▴ 130

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2.7k

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probe filter subset gene symbol affy

9.2 years ago alakatos ▴ 130

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684

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filter deseq2

updated 12 months ago by Michael Love 42k • written 12 months ago by PD • 0

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1.3k

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variantannotation vcf fixed filter

9.3 years ago Anna N. • 0

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3.1k

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deseq filter reads

9.3 years ago ccheung • 0

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1.3k

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limma filter genelist differential gene expression

updated 7.6 years ago by Gordon Smyth 50k • written 7.6 years ago by bi_Scholar • 0

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902

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R filter limma Normalization Microarray

12 months ago Abdul ▴ 20

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1.0k

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missing data filter

updated 8.4 years ago by James W. MacDonald 65k • written 8.4 years ago by rgescudero • 0

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1.1k

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rtracklayer gff filter

updated 5.2 years ago by Michael Lawrence ★ 11k • written 5.2 years ago by alslonik • 0

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773

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filter deseq2

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by charles.foster ▴ 160

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1.3k

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RNA WGCNA filter

4.8 years ago modarzi ▴ 10

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691

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flowCore openCyto Summary Result Filter

updated 4.0 years ago by Jake Wagner ▴ 310 • written 4.1 years ago by noviello • 0

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1.3k

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flowcore gate subsetting filter

updated 8.6 years ago by Jiang, Mike ★ 1.3k • written 8.6 years ago by peterfoster ▴ 20

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550

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filter gate_quad_tmix gt_gating

2.2 years ago • updated 2.0 years ago Pierre • 0

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1.8k

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deseq2 filter genefilter

updated 6.5 years ago by Michael Love 42k • written 6.5 years ago by Björn • 0

17 results • Page 1 of 1

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Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k

I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?

Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…

Answer: meffil.snp.concordance by James W. MacDonald 65k

This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…

Answer: minfi latest update for EPIC V2 chip by James W. MacDonald 65k

Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…

Votes

Answer: How to save the DEXSeq results

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Comment: minfi support of illumina Infinium methylationEPIC v2.0

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

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