Showing : Genesis • reset
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Conditional analysis
GENESIS
21 months ago SuperDad • 0
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1
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847
views
GENESIS: error in crossprod
GENESIS
2.0 years ago Stephanie M. Gogarten ▴ 890
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2
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1.3k
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GENESIS: Can not use GdsGenotypeReader to read a gds file
GENESIS GWASTools GDSfile
updated 2.2 years ago by ▴ 890 • written 2.2 years ago by • 0
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2
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1.0k
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SKAT-O method using GENESIS, question about range iterator using SeqVarWindowIterator
GENESIS SeqVarTools
updated 2.3 years ago by ▴ 890 • written 2.3 years ago by • 0
1
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1
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1.3k
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HOW to FIX - PCAir excludes all my SNPs because there is no chromosome information
GENESIS autosome-only=FALSE? PCAir
updated 2.3 years ago by 68k • written 2.3 years ago by ▴ 10
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0
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788
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How many ancestries to send in admixMap() when doing a two-way analysis?
GENESIS admixMap
2.4 years ago mailtoshivam13 • 0
2
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5
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1.6k
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assocTestSingle output with GxE
GENESIS
updated 2.7 years ago by ▴ 890 • written 2.7 years ago by • 0
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1
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735
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Reference categories for factors
assocTestSingle GENESIS
written 3.0 years ago by • 0
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2
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1.3k
views
kinToMatrix creates an empty matrix (except for diagonal 0.5 values)
kingToMatrix GENESIS Plants
3.3 years ago Monica • 0
1
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2
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5.8k
views
Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 5.1 years ago by • 0 • written 6.2 years ago by • 0
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1
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1.4k
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Approximations to Est and Est.SE in GENESIS
GENESIS
5.2 years ago Stephanie M. Gogarten ▴ 890
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0
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1.1k
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X chromosome analyses for males in GENESIS
GENESIS
5.3 years ago Stephanie M. Gogarten ▴ 890
0
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3
replies
2.5k
views
Alternate allele for GENESIS?
genesis effect allele association analysis
updated 5.5 years ago by ▴ 890 • written 5.5 years ago by • 0
0
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1
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1.2k
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using GENESIS R package with non-human species
genesis gwastools
5.6 years ago Stephanie M. Gogarten ▴ 890
0
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2
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1.5k
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Association testing model in GENESIS
genesis
updated 5.6 years ago by ▴ 890 • written 5.6 years ago by • 0
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1
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1.9k
views
GENESIS multiple gds files
genesis gds SeqVarData
updated 5.7 years ago by ▴ 890 • written 5.7 years ago by • 0
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8
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2.6k
views
Question: GENESIS: assocTestSingle() is not giving any output; guessing that it is arising from GenotypeBlockIterator()
Genesis
6.0 years ago alipka ▴ 10
2
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1
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1.2k
views
Does GENESIS match scan IDs for genotype and phenotype data?
GENESIS
updated 6.1 years ago by ▴ 890 • written 6.1 years ago by ▴ 10
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0
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1.3k
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Normalisation of Data before loading in TMixClust
rna-seq tmixclust k-means clustering gene expression genesis
6.2 years ago astridite • 0
2
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1
reply
1.3k
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Why did the Wald test disappear from GENESIS?
genesis
6.3 years ago Stephanie M. Gogarten ▴ 890
1
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3
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1.9k
views
Error in fitNullMM from GENESIS package on highly-related samples
GENESIS
6.3 years ago Corey.Cox • 0
1
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1
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1.5k
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Calculating the z score from wald test association results in GENESIS
GENESIS zscore wald
updated 6.4 years ago by ▴ 890 • written 6.4 years ago by ▴ 10
3
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6
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2.4k
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Interpreting the output of score test using GENESIS
genesis output score
updated 6.4 years ago by ▴ 890 • written 6.4 years ago by ▴ 10
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4
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1.7k
views
Sporadic missingness with admixmmap
genesis admixmap
updated 6.5 years ago by ▴ 890 • written 6.5 years ago by • 0
0
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3
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2.8k
views
Can't install Genesis
Genesis Installation
updated 6.5 years ago by ★ 6.6k • written 6.5 years ago by ▴ 10
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3
replies
1.8k
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 6.6 years ago by ▴ 70 • written 6.6 years ago by • 0
6
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11
replies
3.9k
views
Genesis: doubts with admixMAPMM
genesis admixmap
updated 6.8 years ago by ▴ 890 • written 6.8 years ago by • 0
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1
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1.4k
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betas for binary outcome
genesis
6.9 years ago Stephanie M. Gogarten ▴ 890
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13
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3.6k
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GENESIS pcrelate() write gds file doesn't work
genesis pcrelate gds
updated 7.0 years ago by ▴ 890 • written 7.0 years ago by • 0
4
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2
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2.4k
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Imputed dosages in GENESIS
genesis gwastools seqarray
7.4 years ago • updated 7.1 years ago Stephanie M. Gogarten ▴ 890
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1
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1.4k
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Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
7.1 years ago naglemi ▴ 10
1
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1
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1.5k
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 7.3 years ago by ▴ 70 • written 7.3 years ago by ▴ 10
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1
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1.5k
views
GENESIS pcrelate() to load gds file and continue where the function broke
genesis pcrrelate gds
updated 7.3 years ago by ▴ 890 • written 7.3 years ago by • 0
0
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1
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1.3k
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Using previously calculated PCs in GENESIS
genesis snprelate
7.4 years ago Stephanie M. Gogarten ▴ 890
0
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1
reply
1.5k
views
Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 7.4 years ago by ▴ 30 • written 7.4 years ago by ▴ 10
0
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1
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1.2k
views
selecting SNPs and samples in GENESIS
genesis
7.6 years ago Stephanie M. Gogarten ▴ 890
0
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3
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1.8k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 7.6 years ago by ▴ 70 • written 7.6 years ago by ▴ 10
3
votes
4
replies
2.1k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 7.6 years ago by ▴ 70 • written 7.6 years ago by ▴ 10
2
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8
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2.4k
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GENESIS: PCAIR: Error in acc(object, NL[cnode]) : unmatched node provided
genesis pcair
7.8 years ago GENOMIC_region • 0
0
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7
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2.7k
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GENESIS: king2mat: subscript out of bounds
genesis
7.8 years ago Stephanie M. Gogarten ▴ 890
40 results • Page 1 of 1
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Comment: Question on processing compound protein groups in limpa by JKim • 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa by Gordon Smyth 53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input by Gordon Smyth 53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2 by a2a2hset32aa • 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts by a2a2hset32aa • 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
Votes
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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