Showing : Genesis • reset
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Conditional analysis
GENESIS
21 months ago SuperDad • 0
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1
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839
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GENESIS: error in crossprod
GENESIS
2.0 years ago Stephanie M. Gogarten ▴ 890
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2
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1.3k
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GENESIS: Can not use GdsGenotypeReader to read a gds file
GENESIS GWASTools GDSfile
updated 2.2 years ago by ▴ 890 • written 2.2 years ago by • 0
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2
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1.0k
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SKAT-O method using GENESIS, question about range iterator using SeqVarWindowIterator
GENESIS SeqVarTools
updated 2.3 years ago by ▴ 890 • written 2.3 years ago by • 0
1
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1
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1.3k
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HOW to FIX - PCAir excludes all my SNPs because there is no chromosome information
GENESIS autosome-only=FALSE? PCAir
updated 2.3 years ago by 68k • written 2.3 years ago by ▴ 10
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786
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How many ancestries to send in admixMap() when doing a two-way analysis?
GENESIS admixMap
2.3 years ago mailtoshivam13 • 0
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5
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1.6k
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assocTestSingle output with GxE
GENESIS
updated 2.6 years ago by ▴ 890 • written 2.7 years ago by • 0
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1
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733
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Reference categories for factors
assocTestSingle GENESIS
written 3.0 years ago by • 0
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2
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1.3k
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kinToMatrix creates an empty matrix (except for diagonal 0.5 values)
kingToMatrix GENESIS Plants
3.3 years ago Monica • 0
1
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2
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5.8k
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Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 5.0 years ago by • 0 • written 6.2 years ago by • 0
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1
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1.4k
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Approximations to Est and Est.SE in GENESIS
GENESIS
5.2 years ago Stephanie M. Gogarten ▴ 890
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0
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1.1k
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X chromosome analyses for males in GENESIS
GENESIS
5.3 years ago Stephanie M. Gogarten ▴ 890
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3
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2.4k
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Alternate allele for GENESIS?
genesis effect allele association analysis
updated 5.5 years ago by ▴ 890 • written 5.5 years ago by • 0
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1
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1.2k
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using GENESIS R package with non-human species
genesis gwastools
5.6 years ago Stephanie M. Gogarten ▴ 890
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2
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1.5k
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Association testing model in GENESIS
genesis
updated 5.6 years ago by ▴ 890 • written 5.6 years ago by • 0
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1
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1.9k
views
GENESIS multiple gds files
genesis gds SeqVarData
updated 5.7 years ago by ▴ 890 • written 5.7 years ago by • 0
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8
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2.6k
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Question: GENESIS: assocTestSingle() is not giving any output; guessing that it is arising from GenotypeBlockIterator()
Genesis
6.0 years ago alipka ▴ 10
2
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1
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1.2k
views
Does GENESIS match scan IDs for genotype and phenotype data?
GENESIS
updated 6.0 years ago by ▴ 890 • written 6.0 years ago by ▴ 10
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0
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1.3k
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Normalisation of Data before loading in TMixClust
rna-seq tmixclust k-means clustering gene expression genesis
6.2 years ago astridite • 0
2
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1
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1.3k
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Why did the Wald test disappear from GENESIS?
genesis
6.3 years ago Stephanie M. Gogarten ▴ 890
1
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3
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1.9k
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Error in fitNullMM from GENESIS package on highly-related samples
GENESIS
6.3 years ago Corey.Cox • 0
1
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1
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1.5k
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Calculating the z score from wald test association results in GENESIS
GENESIS zscore wald
updated 6.4 years ago by ▴ 890 • written 6.4 years ago by ▴ 10
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6
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2.4k
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Interpreting the output of score test using GENESIS
genesis output score
updated 6.4 years ago by ▴ 890 • written 6.4 years ago by ▴ 10
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4
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1.7k
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Sporadic missingness with admixmmap
genesis admixmap
updated 6.4 years ago by ▴ 890 • written 6.4 years ago by • 0
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3
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2.8k
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Can't install Genesis
Genesis Installation
updated 6.5 years ago by ★ 6.6k • written 6.5 years ago by ▴ 10
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3
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1.8k
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 6.6 years ago by ▴ 70 • written 6.6 years ago by • 0
6
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11
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3.9k
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Genesis: doubts with admixMAPMM
genesis admixmap
updated 6.8 years ago by ▴ 890 • written 6.8 years ago by • 0
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1
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1.4k
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betas for binary outcome
genesis
6.9 years ago Stephanie M. Gogarten ▴ 890
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13
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3.6k
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GENESIS pcrelate() write gds file doesn't work
genesis pcrelate gds
updated 6.9 years ago by ▴ 890 • written 6.9 years ago by • 0
4
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2
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2.4k
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Imputed dosages in GENESIS
genesis gwastools seqarray
7.4 years ago • updated 7.0 years ago Stephanie M. Gogarten ▴ 890
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1
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1.4k
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Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
7.0 years ago naglemi ▴ 10
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1
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1.5k
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Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 7.2 years ago by ▴ 70 • written 7.2 years ago by ▴ 10
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1
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1.5k
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GENESIS pcrelate() to load gds file and continue where the function broke
genesis pcrrelate gds
updated 7.3 years ago by ▴ 890 • written 7.3 years ago by • 0
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1
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1.3k
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Using previously calculated PCs in GENESIS
genesis snprelate
7.4 years ago Stephanie M. Gogarten ▴ 890
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1
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1.5k
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Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 7.4 years ago by ▴ 30 • written 7.4 years ago by ▴ 10
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1
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1.2k
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selecting SNPs and samples in GENESIS
genesis
7.5 years ago Stephanie M. Gogarten ▴ 890
0
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3
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1.8k
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GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 7.6 years ago by ▴ 70 • written 7.6 years ago by ▴ 10
3
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4
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2.1k
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Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 7.6 years ago by ▴ 70 • written 7.6 years ago by ▴ 10
2
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8
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2.4k
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GENESIS: PCAIR: Error in acc(object, NL[cnode]) : unmatched node provided
genesis pcair
7.8 years ago GENOMIC_region • 0
0
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7
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2.7k
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GENESIS: king2mat: subscript out of bounds
genesis
7.8 years ago Stephanie M. Gogarten ▴ 890
40 results • Page 1 of 1
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Answer: Unable to create venndiagram using VennDiagram 1.5.1 package by kesha • 0
<a href=https://vavadacasinox.com/>vavadacasinox.com</a>
Comment: How to convert .raw data for use in xcms by a2a2asawhaa • 0
try converting your files to the older mzXML format, which remains highly stable for XCMS. While waiting for large datasets to process, you…
Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0
Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k
I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…
Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k
Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…
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Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Which preprocessing steps are needed before running limpa?
Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
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