Bioconductor Isoform

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2.8k

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limma isoform edgeR salmon R

updated 3 months ago by ATpoint ★ 4.7k • written 3 months ago by mohammedtoufiq91 ▴ 10

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1.6k

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isoformswitchanalyzer isoform differential isoform usage

written 6.3 years ago by A ▴ 60

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884

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pacbio isoform

written 2.3 years ago by lhaiyan3 • 0

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567

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Isoform IsoformSwitchAnalyzeR

22 months ago Craig • 0

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2.9k

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RNASeqData isoform DESeq2

2.9 years ago • updated 2.8 years ago priyanka.m • 0

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1.7k

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isoform RNA-seq hisat2 stringtie ballgown

4.5 years ago ra711 • 0

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1.7k

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isoform deep sequencing voom

updated 4.6 years ago by Gordon Smyth 52k • written 4.6 years ago by Ina Hoeschele ▴ 620

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1.4k

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tximport isoform voom

updated 4.7 years ago by Gordon Smyth 52k • written 4.7 years ago by Ina Hoeschele ▴ 620

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1.6k

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cancer Isoform limma IsoformSwitchAnalyzeR

updated 5.4 years ago by k.vitting.seerup ▴ 120 • written 5.5 years ago by asmita • 0

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1.4k

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gene isoform quantification rna-seq

updated 5.6 years ago by swbarnes2 ★ 1.4k • written 5.6 years ago by angel.campos • 0

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1.2k

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kallisto differential isoform usage isoform

7.4 years ago ilyco • 0

11 results • Page 1 of 1

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Votes

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

A: use tximport's countsFromAbundance when using DESeq2

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